PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g59866.1.p
Common NameBRADI_3g59866, LOC104584324
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 592aa    MW: 64911.4 Da    PI: 7.1205
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g59866.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM96.15.4e-30211551126
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratk..sgyWk.atgk. 88 
                       lp GfrF P+deel+++yL +k++g+++  ++ i e ++y+++P++L  k++k +ekewyf s+r++ky +gkr+ r t+   g+Wk +tg+ 
  Bradi3g59866.1.p  21 LPLGFRFMPKDEELITYYLLPKLQGRQHVPNDRIIEDNVYTCHPNQLIeKHAKRGEKEWYFLSPRERKYDQGKRPARNTNdrLGRWKaSTGSk 113
                       699************************8887889999**********7578888999********************887557****445542 PP

               NAM  89 dkevlsk....kgelvglkktLvfykgrapkgektdWvmhey 126
                       d ++ ++    ++ +v   ++L +++g   + ekt+W+m+e 
  Bradi3g59866.1.p 114 DSSIQDNksstSDGTVYSERVLGYFRGPIGSEEKTKWLMQEL 155
                       45555545444444499**********99999********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.5E-3518185IPR003441NAC domain
PROSITE profilePS5100537.69121185IPR003441NAC domain
PfamPF023653.0E-1522155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MAEREEEKEK KKIQGGEELC LPLGFRFMPK DEELITYYLL PKLQGRQHVP NDRIIEDNVY  60
TCHPNQLIEK HAKRGEKEWY FLSPRERKYD QGKRPARNTN DRLGRWKAST GSKDSSIQDN  120
KSSTSDGTVY SERVLGYFRG PIGSEEKTKW LMQELMVPEY ANEIDKNGGD NSILDDYVMC  180
KIYVTPRDKG TNDDEAGPSC SEDQTESPLG PTSSGHDQPG HPNKLSEKLA GKRPVLQERQ  240
PPCRDAATAK RARLRNHGPQ LGPPTQQVLT QTRPMVPHGG GNTQVPFGGA GRGLAAGRPM  300
AMRGRPRAPM PMPMPMSAGY RGQAAAPMGY QYHGAQAPRP PAGYRGQEPV PFIGQARQRQ  360
AMATMRPSGP AAGGQAVSPP SASRPSPQQQ QPQQPQPETE EMREARVIRQ HMEEYFRLGR  420
QGLLPSSLWP PPCFAAQQQR PTMPFAQQQQ QQGAIMAFRQ QQQQGPTMPF THQQQQQPYF  480
VPEFVNHHDA GTAGGMLPQF RLDNFYASEA AGEFQGCSWE PMVPVLATGD SAGAMAPASA  540
EASVLSGAGN EGSGARDCID GGGDEKRFVD AEVSPPGSAR ADGGDDDDSP Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-201818314163NO APICAL MERISTEM PROTEIN
1ut4_B5e-201818314163NO APICAL MERISTEM PROTEIN
1ut7_A5e-201818314163NO APICAL MERISTEM PROTEIN
1ut7_B5e-201818314163NO APICAL MERISTEM PROTEIN
4dul_A5e-201818314163NAC domain-containing protein 19
4dul_B5e-201818314163NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g59866.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0Q3FSJ20.0A0A0Q3FSJ2_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143612024
Representative plantOGRP1463834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.17e-25NAC family protein