PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g60352.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TCP
Protein Properties Length: 252aa    MW: 25489.6 Da    PI: 9.8952
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g60352.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.28.1e-40301322103
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssgkaak 92 
                       a++k +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tg+++++as++  +++s +ss+s++s+++a++
  Bradi3g60352.1.p  30 AVRKAPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGSGTTPASFStsSPSSLRSSNSTHSHSAAQA 122
                       789*************************************************************99999888666666666666444443333 PP

               TCP  93 saakskksqks 103
                       +   +    ++
  Bradi3g60352.1.p 123 QP-LGAGGAHQ 132
                       33.22222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.9E-3436126IPR005333Transcription factor, TCP
PROSITE profilePS5136928.2093690IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MTTRPDGGGG AAEKQMVPVA AAANGNGALA VRKAPSKDRH SKVDGRGRRI RMPIICAARV  60
FQLTRELGHK SDGQTIEWLL RQAEPSIIAA TGSGTTPASF STSSPSSLRS SNSTHSHSAA  120
QAQPLGAGGA HQHHHLLPHA APFILGKRVR GGEDDEDGHG NDQAAAVSMG PAPGFWALPA  180
RAADFGQLWS FAAAPEMMVA AAAPAMAGEA SAARVGNYLP MGQGVNLIAS LGGPGPAAGP  240
PAGRAEEEAA R*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g60352.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3748357e-96AK374835.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3077J21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236169.21e-179transcription factor TCP7-like
SwissprotQ9FMX23e-71TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A2K2D6041e-178A0A2K2D604_BRADI; Uncharacterized protein
STRINGBRADI3G60350.14e-86(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP194133100
Representative plantOGRP85141016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.13e-39TCP family protein