PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g00925.1.p

Common Name

BRADI_4g00925

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 68aa MW: 7829.63 Da PI: 3.9731

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g00925.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	22.2	4.5e-07	28	59	1	32
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrt 32 +fYn+YA e GFsvrks+ + + n+ei+ r+ Bradi4g00925.1.p 28 DFYNSYALEKGFSVRKSYVEWDEANQEIILRK 59 6******************9999999998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.5E-5	28	59	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 68 aa Download sequence Send to blast
MEDMVDESVD EYLDIVGKTF GSEDDGFDFY NSYALEKGFS VRKSYVEWDE ANQEIILRKM 60 GGFLRKD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g00925.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014751141.1	4e-28	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_024314638.1	7e-28	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A0Q3P9N6	3e-40	A0A0Q3P9N6_BRADI; Uncharacterized protein
STRING	BRADI4G00925.1	9e-39	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2449	9	76
Representative plant	OGRP11434	2	5

Link Out ? help Back to Top
Phytozome	Bradi4g00925.1.p