PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g01300.1.p
Common NameBRADI_4g01300, LOC100826382
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family YABBY
Protein Properties Length: 193aa    MW: 21097.9 Da    PI: 9.1112
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g01300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY227.73.1e-7081795170
             YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaes.....hldeslkeelleelkveeenlksnvekeesa 92 
                         +eqvCyv+CnfCnt+lavsvP +s++++vtvrCGhCt+llsvnl+  ++  a++      hl+ ++ +++++     +++ +   ++++s+
  Bradi4g01300.1.p   8 APAEQVCYVHCNFCNTVLAVSVPGNSMLSIVTVRCGHCTNLLSVNLRGLMHSSAVVPaaqdhHLQANVSKQQVHGVDGFRDHPEFGSSSSSSS 100
                       5789******************************************98886655544000113444444333333332233333333333333 PP

             YABBY  93 stsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                       s++ +  ++  + ++++ + +    rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ih gl
  Bradi4g01300.1.p 101 SSKFRLPMVMFSPQNDLLQEHTlHSRPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHCGL 179
                       3444433444444444444444369***************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046906.1E-729179IPR006780YABBY protein
SuperFamilySSF470952.75E-8124173IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.9E-5126173IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MSSAAQIAPA EQVCYVHCNF CNTVLAVSVP GNSMLSIVTV RCGHCTNLLS VNLRGLMHSS  60
AVVPAAQDHH LQANVSKQQV HGVDGFRDHP EFGSSSSSSS SSKFRLPMVM FSPQNDLLQE  120
HTLHSRPPEK RQRVPSAYNR FIKEEIRRIK ANNPDISHRE AFSTAAKNWA HYPNIHCGLS  180
SGRDGGKKLA VE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g01300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577246.11e-142protein YABBY 6 isoform X1
SwissprotQ2QM171e-88YAB6_ORYSJ; Protein YABBY 6
TrEMBLI1IGA31e-141I1IGA3_BRADI; Uncharacterized protein
STRINGBRADI4G01300.11e-142(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Representative plantOGRP22101236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.25e-55YABBY family protein