PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g01300.2.p
Common NameBRADI_4g01300, LOC100826382
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family YABBY
Protein Properties Length: 186aa    MW: 20342 Da    PI: 8.8562
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g01300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY227.63.1e-7081725170
             YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshl.deslkeelleelkveeenlksnvekeesastsv 96 
                         +eqvCyv+CnfCnt+lavsvP +s++++vtvrCGhCt+llsvnl+  ++  a++    d++l+ + ++  +++  ++ s  ++++s++   
  Bradi4g01300.2.p   8 APAEQVCYVHCNFCNTVLAVSVPGNSMLSIVTVRCGHCTNLLSVNLRGLMHSSAVVPAAqDHHLQVHGVDGFRDHP-EFGSSSSSSSSSKFRL 99 
                       5789*******************************************99988887765414555556666666665.5666667777777777 PP

             YABBY  97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                       ++ ++s ++d    ++    rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ih gl
  Bradi4g01300.2.p 100 PMVMFSPQNDLLQEHTL-HSRPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHCGL 172
                       77777665555555444.59***************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.5E-729172IPR006780YABBY protein
SuperFamilySSF470952.49E-8117166IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.7E-5119166IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MSSAAQIAPA EQVCYVHCNF CNTVLAVSVP GNSMLSIVTV RCGHCTNLLS VNLRGLMHSS  60
AVVPAAQDHH LQVHGVDGFR DHPEFGSSSS SSSSSKFRLP MVMFSPQNDL LQEHTLHSRP  120
PEKRQRVPSA YNRFIKEEIR RIKANNPDIS HREAFSTAAK NWAHYPNIHC GLSSGRDGGK  180
KLAVE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g01300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577247.11e-137protein YABBY 6 isoform X2
SwissprotQ2QM177e-90YAB6_ORYSJ; Protein YABBY 6
TrEMBLI1IGA41e-135I1IGA4_BRADI; Uncharacterized protein
STRINGBRADI4G01300.11e-128(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.22e-56YABBY family protein