PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g01820.10.p
Common NameBRADI_4g01820, LOC100844028
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NF-YA
Protein Properties Length: 179aa    MW: 19918.5 Da    PI: 7.0214
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g01820.10.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA51.53.2e-16105139136
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrk 36 
                        +ep+YVNaKQy++Il+RRq+Rak+e+e+kl +k+rk
  Bradi4g01820.10.p 105 EEPVYVNAKQYNAILRRRQSRAKAESERKL-IKGRK 139
                        69****************************.99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.9E-9103161IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115217.116104139IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.0E-12106139IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860109129IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MTSVADGISG DHRADEQQQQ QTQAGHEDQQ EAPATSIGSQ TMVVAPSTDY VMPYAHQEVC  60
HAMGQIAYPS IDPYFYGAYG GQPMMHPPLV GMHPAGLPLP TDAIEEPVYV NAKQYNAILR  120
RRQSRAKAES ERKLIKGRKL RVGQKHKCTT DRADNQVYSP FYILYLHLKI DLLHIELS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g01820.10.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010237029.11e-131nuclear transcription factor Y subunit A-7 isoform X2
TrEMBLI1IGG91e-129I1IGG9_BRADI; Uncharacterized protein
STRINGBRADI4G01820.12e-98(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.19e-23nuclear factor Y, subunit A7