PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g01820.5.p

Common Name

BRADI_4g01820, LOC100844028

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NF-YA

Protein Properties

Length: 212aa MW: 22930.3 Da PI: 7.8704

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g01820.5.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104.2	1.1e-32	105	161	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e+e+kl +k+rkpylheSRh+hAl+R+Rg gGrF Bradi4g01820.5.p 105 EEPVYVNAKQYNAILRRRQSRAKAESERKL-IKGRKPYLHESRHQHALKRARGAGGRF 161 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.3E-35	103	164	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.934	104	164	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	8.1E-27	106	161	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.0E-23	107	129	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	109	129	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.0E-23	138	161	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MTSVADGISG DHRADEQQQQ QTQAGHEDQQ EAPATSIGSQ TMVVAPSTDY VMPYAHQEVC 60 HAMGQIAYPS IDPYFYGAYG GQPMMHPPLV GMHPAGLPLP TDAIEEPVYV NAKQYNAILR 120 RRQSRAKAES ERKLIKGRKP YLHESRHQHA LKRARGAGGR FLNAKSDDNE EHSDSSSKDK 180 QNGVAPRSSG QPSTAPSSKG ASPANQTGNR E*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	8e-22	104	177	1	74	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g01820.5.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK363934	1e-155	AK363934.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2020D05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010237027.1	1e-155	nuclear transcription factor Y subunit A-7 isoform X1
Refseq	XP_010237028.1	1e-155	nuclear transcription factor Y subunit A-7 isoform X1
Refseq	XP_024319080.1	1e-155	nuclear transcription factor Y subunit A-7 isoform X1
Swissprot	Q84JP1	4e-42	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	I1IGH1	1e-154	I1IGH1_BRADI; Uncharacterized protein
STRING	BRADI4G01820.1	1e-155	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6555	38	53
Representative plant	OGRP680	16	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.1	3e-39	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	Bradi4g01820.5.p
Entrez Gene	100844028

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]