PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g02040.1.p
Common NameBRADI_4g02040, LOC100837007
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family LSD
Protein Properties Length: 180aa    MW: 18622.8 Da    PI: 8.4376
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g02040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD140.54.4e-13731125
           zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                      C+gCr +L YPrGApsV+Ca+C++V
  Bradi4g02040.1.p  7 CHGCRSVLLYPRGAPSVCCAVCHAV 31
                      ************************9 PP
2zf-LSD145.11.6e-144670125
           zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                      CggCrtlL+Y+r+A+ VRC++CdtV
  Bradi4g02040.1.p 46 CGGCRTLLMYTRNATTVRCSCCDTV 70
                      ************************9 PP
3zf-LSD1491e-1587111125
           zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                       Cg+C+t+L+YP+GA+sV+Ca+C+++
  Bradi4g02040.1.p  87 CGQCQTVLMYPYGASSVKCAICNFI 111
                       ***********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010535.9E-12432IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-10731IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.6E-154373IPR005735Zinc finger, LSD1-type
PfamPF069437.4E-124670IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.3E-1284114IPR005735Zinc finger, LSD1-type
PfamPF069435.3E-1487111IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MQSQIVCHGC RSVLLYPRGA PSVCCAVCHA VTSAPPPGME MAQLICGGCR TLLMYTRNAT  60
TVRCSCCDTV NLVRAGPPVS SIAHVNCGQC QTVLMYPYGA SSVKCAICNF ITTIGMNTVR  120
PLPPTMPAPN GSQYSVPSTS APSAPSQNVT VVVENPMTVD EKGKLVSNVV VGVTTGGKK*
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g02040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3595790.0AK359579.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1099G04.
GenBankEU5452330.0EU545233.1 Hordeum vulgare subsp. vulgare clone CEa0008p08 LSD1-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577533.11e-126protein LOL2
SwissprotQ2QMB31e-100LOL2_ORYSJ; Protein LOL2
TrEMBLI1IGJ81e-125I1IGJ8_BRADI; Uncharacterized protein
STRINGBRADI4G02040.11e-125(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Representative plantOGRP11461753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.11e-52lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wu J, et al.
    OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa.
    Plant J., 2014. 80(6): p. 1118-30
    [PMID:25353370]