PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g02390.3.p
Common NameBRADI_4g02390, LOC100829642
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CPP
Protein Properties Length: 589aa    MW: 62965.8 Da    PI: 8.0762
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g02390.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.86.8e-16280319241
               TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                       ++k+C+CkkskClk+YCeCf+ag++Cse C+C++C Nk +
  Bradi4g02390.3.p 280 SCKRCSCKKSKCLKLYCECFHAGVFCSEPCSCQGCLNKPS 319
                       689**********************************976 PP
2TCR52.51e-16365403139
               TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                       ++k+gCnCkks+ClkkYCeCf+ g+ Cs +C+Ce+CkN 
  Bradi4g02390.3.p 365 RHKRGCNCKKSSCLKKYCECFQGGVGCSISCRCEGCKNA 403
                       589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.1E-15279320IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.186280405IPR005172CRC domain
PfamPF036385.9E-12282317IPR005172CRC domain
SMARTSM011142.5E-17365406IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.4E-12367403IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MDSSQPGRIV HENQLCEQSR DGFVAYDEDY LATEELNSDM LRLAPPFDAE TQLMNGTLNA  60
DNAHSGTLLT DGSSGSYINN AAHDPHLYWD GAVDGSAMDY TPQLLPGVCQ NQLVSNDQLC  120
NALTEPSNHM PMDQSALSQH MRGTRRRCLF NEKAGAVNKA AKKTSDRHSA NTTTPRCKTS  180
SSDHNSKPMK TPPCALPGIG LHLNALATIP KDKIVPYAAQ SSTIQASNFP SAVSSSPATS  240
EPNTANEDSS QAIVVANADE SGQGSPKKKR HKFDNGDGTS CKRCSCKKSK CLKLYCECFH  300
AGVFCSEPCS CQGCLNKPSN METVLSTREQ IESRNPLAFA PKVIRTSEPG QELGEQSNKT  360
PASARHKRGC NCKKSSCLKK YCECFQGGVG CSISCRCEGC KNAFGRREGV VLLSIEQAKQ  420
GSVENIACVK EETSENDNQL VIYQAANPAS AENVLTTPSV EDIRPLSALP PSSSKRPRSS  480
TKLIGHSSRL CNSQAPLKTD ILLSPFESYA EMVLGDGASD VLKGGSSPQT SVKVVSPNKK  540
RISPPRIGTG LSPICKNGRK LILKSIPSFP SLCGDVNKVD PKTSSPAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1528440214120Protein lin-54 homolog
5fd3_B3e-1528440214120Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g02390.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577764.10.0protein tesmin/TSO1-like CXC 2 isoform X1
RefseqXP_014758712.10.0protein tesmin/TSO1-like CXC 2 isoform X1
TrEMBLI1IGN80.0I1IGN8_BRADI; Uncharacterized protein
STRINGBRADI4G02390.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.13e-81TESMIN/TSO1-like CXC 2