PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g02390.5.p

Common Name

BRADI_4g02390, LOC100829642

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

CPP

Protein Properties

Length: 770aa MW: 82173.2 Da PI: 7.727

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g02390.5.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	49.3	9.5e-16	463	502	2	41
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k+C+CkkskClk+YCeCf+ag++Cse C+C++C Nk + Bradi4g02390.5.p 463 SCKRCSCKKSKCLKLYCECFHAGVFCSEPCSCQGCLNKPS 502 689**********************************976 PP
2	TCR	52	1.4e-16	546	584	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeCf+ g+ Cs +C+Ce+CkN Bradi4g02390.5.p 546 RHKRGCNCKKSSCLKKYCECFQGGVGCSISCRCEGCKNA 584 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	3.1E-15	462	503	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	35.674	463	586	IPR005172	CRC domain
Pfam	PF03638	8.2E-12	465	500	IPR005172	CRC domain
SMART	SM01114	2.5E-17	546	587	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	4.7E-12	548	584	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 770 aa Download sequence Send to blast
MDTPDRPRAA ATNAAAAGFE DSPVFNFINN LSPIPPPKPQ ASAHNVQLFK SSDLAPVSSI 60 FASPHVNPAK ESKLVVRDDP VQLPQDSNSP NSVRTRLGTA IRLIKSKNIV SENCSFTCHL 120 SQAPIDSSIN TSISTSNLPQ PIQFVGGSAE CDKNQNAGGD KDLSTDQECP VEGVFFDHTG 180 IDKMDSSQPG RIVHENQLCE QSRDGFVAYD EDYLATEELN SDMLRLAPPF DAETQLMNGT 240 LNADNAHSGT LLTDGSSGSY INNAAHDPHL YWDGAVDGSA MDYTPQLLPG VCQNQLVSND 300 QLCNALTEPS NHMPMDQSAL SQHMRGTRRR CLFNEKAGAV NKAAKKTSDR HSANTTTPRC 360 KTSSSDHNSK PMKTPPCALP GIGLHLNALA TIPKDKIVPY AAQSSTIQAS NFPSAVSSSP 420 ATSEPNTANE DSSQAIVVAN ADESGQGSPK KKRHKFDNGD GTSCKRCSCK KSKCLKLYCE 480 CFHAGVFCSE PCSCQGCLNK PSNMETVLST REQIESRNPL AFAPKVIRTS EPGQELGSNK 540 TPASARHKRG CNCKKSSCLK KYCECFQGGV GCSISCRCEG CKNAFGRREG VVLLSIEQAK 600 QGSVENIACV KEETSENDNQ LVIYQAANPA SAENVLTTPS VEDIRPLSAL PPSSSKRPRS 660 STKLIGHSSR LCNSQAPLKT DILLSPFESY AEMVLGDGAS DVLKGGSSPQ TSVKVVSPNK 720 KRISPPRIGT GLSPICKNGR KLILKSIPSF PSLCGDVNKV DPKTSSPAS*

Sequence ? help Back to Top

Protein Sequence Length: 770 aa Download sequence Send to blast

MDTPDRPRAA ATNAAAAGFE DSPVFNFINN LSPIPPPKPQ ASAHNVQLFK SSDLAPVSSI  60
FASPHVNPAK ESKLVVRDDP VQLPQDSNSP NSVRTRLGTA IRLIKSKNIV SENCSFTCHL  120
SQAPIDSSIN TSISTSNLPQ PIQFVGGSAE CDKNQNAGGD KDLSTDQECP VEGVFFDHTG  180
IDKMDSSQPG RIVHENQLCE QSRDGFVAYD EDYLATEELN SDMLRLAPPF DAETQLMNGT  240
LNADNAHSGT LLTDGSSGSY INNAAHDPHL YWDGAVDGSA MDYTPQLLPG VCQNQLVSND  300
QLCNALTEPS NHMPMDQSAL SQHMRGTRRR CLFNEKAGAV NKAAKKTSDR HSANTTTPRC  360
KTSSSDHNSK PMKTPPCALP GIGLHLNALA TIPKDKIVPY AAQSSTIQAS NFPSAVSSSP  420
ATSEPNTANE DSSQAIVVAN ADESGQGSPK KKRHKFDNGD GTSCKRCSCK KSKCLKLYCE  480
CFHAGVFCSE PCSCQGCLNK PSNMETVLST REQIESRNPL AFAPKVIRTS EPGQELGSNK  540
TPASARHKRG CNCKKSSCLK KYCECFQGGV GCSISCRCEG CKNAFGRREG VVLLSIEQAK  600
QGSVENIACV KEETSENDNQ LVIYQAANPA SAENVLTTPS VEDIRPLSAL PPSSSKRPRS  660
STKLIGHSSR LCNSQAPLKT DILLSPFESY AEMVLGDGAS DVLKGGSSPQ TSVKVVSPNK  720
KRISPPRIGT GLSPICKNGR KLILKSIPSF PSLCGDVNKV DPKTSSPAS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	2e-15	467	583	14	120	Protein lin-54 homolog
5fd3_B	2e-15	467	583	14	120	Protein lin-54 homolog
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g02390.5.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010237056.1	0.0	protein tesmin/TSO1-like CXC 2 isoform X3
Swissprot	F4JIF5	1e-95	TCX2_ARATH; Protein tesmin/TSO1-like CXC 2
TrEMBL	A0A2K2CK02	0.0	A0A2K2CK02_BRADI; Uncharacterized protein
STRING	BRADI4G02390.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	1e-77	TESMIN/TSO1-like CXC 2

Link Out ? help Back to Top
Phytozome	Bradi4g02390.5.p
Entrez Gene	100829642

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]