PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g02390.6.p

Common Name

BRADI_4g02390, LOC100829642

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

CPP

Protein Properties

Length: 742aa MW: 79356.2 Da PI: 7.896

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g02390.6.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	49.4	9.1e-16	433	472	2	41
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k+C+CkkskClk+YCeCf+ag++Cse C+C++C Nk + Bradi4g02390.6.p 433 SCKRCSCKKSKCLKLYCECFHAGVFCSEPCSCQGCLNKPS 472 689**********************************976 PP
2	TCR	52.1	1.3e-16	518	556	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeCf+ g+ Cs +C+Ce+CkN Bradi4g02390.6.p 518 RHKRGCNCKKSSCLKKYCECFQGGVGCSISCRCEGCKNA 556 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	3.1E-15	432	473	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	36.186	433	558	IPR005172	CRC domain
Pfam	PF03638	7.9E-12	435	470	IPR005172	CRC domain
SMART	SM01114	2.5E-17	518	559	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	4.5E-12	520	556	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 742 aa Download sequence Send to blast
MDTPDRPRAA ATNAAAAGFE DSPVFNFINN LSPIPPPKPQ ASAHNVQLFK SSDLAPVSSI 60 FASPHVNPAK ESKLVVRDDP VQLPQDSNSP NSVRTRLGTA IRLIKSKNIV SENCSFTCHL 120 SQAPIDSSIN TSISTNQECP VEGVFFDHTG IDKMDSSQPG RIVHENQLCE QSRDGFVAYD 180 EDYLATEELN SDMLRLAPPF DAETQLMNGT LNADNAHSGT LLTDGSSGSY INNAAHDPHL 240 YWDGAVDGSA MDYTPQLLPG VCQNQLVSND QLCNALTEPS NHMPMDQSAL SQHMRGTRRR 300 CLFNEKAGAV NKAAKKTSDR HSANTTTPRC KTSSSDHNSK PMKTPPCALP GIGLHLNALA 360 TIPKDKIVPY AAQSSTIQAS NFPSAVSSSP ATSEPNTANE DSSQAIVVAN ADESGQGSPK 420 KKRHKFDNGD GTSCKRCSCK KSKCLKLYCE CFHAGVFCSE PCSCQGCLNK PSNMETVLST 480 REQIESRNPL AFAPKVIRTS EPGQELGEQS NKTPASARHK RGCNCKKSSC LKKYCECFQG 540 GVGCSISCRC EGCKNAFGRR EGVVLLSIEQ AKQGSVENIA CVKEETSEND NQLVIYQAAN 600 PASAENVLTT PSVEDIRPLS ALPPSSSKRP RSSTKLIGHS SRLCNSQAPL KTDILLSPFE 660 SYAEMVLGDG ASDVLKGGSS PQTSVKVVSP NKKRISPPRI GTGLSPICKN GRKLILKSIP 720 SFPSLCGDVN KVDPKTSSPA S*

Sequence ? help Back to Top

Protein Sequence Length: 742 aa Download sequence Send to blast

MDTPDRPRAA ATNAAAAGFE DSPVFNFINN LSPIPPPKPQ ASAHNVQLFK SSDLAPVSSI  60
FASPHVNPAK ESKLVVRDDP VQLPQDSNSP NSVRTRLGTA IRLIKSKNIV SENCSFTCHL  120
SQAPIDSSIN TSISTNQECP VEGVFFDHTG IDKMDSSQPG RIVHENQLCE QSRDGFVAYD  180
EDYLATEELN SDMLRLAPPF DAETQLMNGT LNADNAHSGT LLTDGSSGSY INNAAHDPHL  240
YWDGAVDGSA MDYTPQLLPG VCQNQLVSND QLCNALTEPS NHMPMDQSAL SQHMRGTRRR  300
CLFNEKAGAV NKAAKKTSDR HSANTTTPRC KTSSSDHNSK PMKTPPCALP GIGLHLNALA  360
TIPKDKIVPY AAQSSTIQAS NFPSAVSSSP ATSEPNTANE DSSQAIVVAN ADESGQGSPK  420
KKRHKFDNGD GTSCKRCSCK KSKCLKLYCE CFHAGVFCSE PCSCQGCLNK PSNMETVLST  480
REQIESRNPL AFAPKVIRTS EPGQELGEQS NKTPASARHK RGCNCKKSSC LKKYCECFQG  540
GVGCSISCRC EGCKNAFGRR EGVVLLSIEQ AKQGSVENIA CVKEETSEND NQLVIYQAAN  600
PASAENVLTT PSVEDIRPLS ALPPSSSKRP RSSTKLIGHS SRLCNSQAPL KTDILLSPFE  660
SYAEMVLGDG ASDVLKGGSS PQTSVKVVSP NKKRISPPRI GTGLSPICKN GRKLILKSIP  720
SFPSLCGDVN KVDPKTSSPA S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	4e-15	437	555	14	120	Protein lin-54 homolog
5fd3_B	4e-15	437	555	14	120	Protein lin-54 homolog
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g02390.6.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003577764.1	0.0	protein tesmin/TSO1-like CXC 2 isoform X1
Refseq	XP_014758712.1	0.0	protein tesmin/TSO1-like CXC 2 isoform X1
Swissprot	F4JIF5	8e-98	TCX2_ARATH; Protein tesmin/TSO1-like CXC 2
TrEMBL	A0A2K2CK05	0.0	A0A2K2CK05_BRADI; Uncharacterized protein
STRING	BRADI4G02390.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	1e-79	TESMIN/TSO1-like CXC 2

Link Out ? help Back to Top
Phytozome	Bradi4g02390.6.p
Entrez Gene	100829642

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]