PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g02570.2.p
Common NameBRADI_4g02570, LOC100834249
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 191aa    MW: 20793.4 Da    PI: 8.464
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g02570.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.32.2e-15111164457
                       XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                        kr +r+ +NRe+ArrsR+RK+a +   e  v +L aeN +L k+l  ++++++
  Bradi4g02570.2.p 111 AKRVKRMLSNRESARRSRKRKQAHQTDIESQVTQLRAENASLLKRLTDMTQKYK 164
                       79*************************************999966555555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.5E-13107164No hitNo description
SMARTSM003381.3E-15108172IPR004827Basic-leucine zipper domain
PfamPF001702.3E-14110164IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.07110165IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-11112163No hitNo description
CDDcd147023.76E-16113163No hitNo description
PROSITE patternPS000360115130IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MEFGADEVVE VNCARGGSGG GDPGVYAAVL KRKLDLYCAA VAKTMEAKPQ ESALGAMQLV  60
SQASDTSQLV SQASFDGDGT VVQGKPANSC TSREQSDVDG DLEENTDPAN AKRVKRMLSN  120
RESARRSRKR KQAHQTDIES QVTQLRAENA SLLKRLTDMT QKYKEATLGN RNLTVDMETM  180
RRKVYILLFS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124130RRSRKRK
2124131RRSRKRKQ
3126131SRKRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g02570.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2515891e-171AK251589.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf118p04, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577778.11e-133light-inducible protein CPRF2
SwissprotQ990901e-30CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLA0A2K2CK491e-137A0A2K2CK49_BRADI; Uncharacterized protein
STRINGBRADI4G02570.11e-132(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.34e-27bZIP family protein
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]