PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g02665.1.p
Common NameBRADI_4g02665
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 133aa    MW: 14754 Da    PI: 10.2179
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g02665.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.61.4e-152421055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      +rRRd+iN+++ +L++l+P++     +K +Ka++Le++++YIksLq
  Bradi4g02665.1.p  2 QRRRDKINDKMRTLQQLMPTC-----TKTDKASTLEEVIQYIKSLQ 42
                      8********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.682141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.89E-14242No hitNo description
PfamPF000109.5E-13242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.24E-15255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-9247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-15249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MQRRRDKIND KMRTLQQLMP TCTKTDKAST LEEVIQYIKS LQYQMQVLSN GYGVPTAISP  60
PSGMVSTTSM QPVRDAFGGR RATSVALPPY PFSPTAFACP HYGNGMPLPV PYRDQIGSMY  120
AAQQLAHRRQ QT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g02665.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024318881.16e-93transcription factor ALC-like
TrEMBLA0A0Q3GYM35e-93A0A0Q3GYM3_BRADI; Uncharacterized protein
STRINGOMERI05G02560.26e-16(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5024822
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-19phytochrome interacting factor 3