PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g02673.1.p
Common NameBRADI_4g02673
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 216aa    MW: 23234.5 Da    PI: 7.0716
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g02673.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.1e-11100140955
                       HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        rrRR +iN+++ +L++++P +       +s a++L ++++Y++sLq
  Bradi4g02673.1.p 100 ARRRRCKINEKLKTLQQMVPGC------EPSQASTLDQTIHYVRSLQ 140
                       69*******************9......79****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.90E-1387144No hitNo description
PROSITE profilePS5088810.92591139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-1397147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-1397156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-1397145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-9100140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MTSCSGEEPA GELATNFLEL LGDQDDYRYP THGMLATPPS DDEMAAWLYP IISHGDQKPA  60
VGDDDVVKQN DRPVVSSVKA TMNKQLKEKR LSTTPKKNLA RRRRCKINEK LKTLQQMVPG  120
CEPSQASTLD QTIHYVRSLQ NQVQAMSVVG CSLRPPVPAS IGPPPPPMMV PFVPILPCPA  180
HHPAAIHDAA TGAVDLPASS SCTGCWWPSS SSGLQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g02673.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020398223.13e-26transcription factor PIF1
TrEMBLA0A0Q3EI221e-158A0A0Q3EI22_BRADI; Uncharacterized protein
STRINGSb08g020300.14e-23(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62832452
Representative plantOGRP10440410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.16e-14bHLH family protein