PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g02950.3.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 384aa    MW: 43802.6 Da    PI: 8.2191
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g02950.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.91.4e-16451251299
                       HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       + + +++p kfa++++g+   +k  tl+ +sg++W+v +  +k  ++ ++ +GW  F+ka++L+e D++ Fk +g+ +f   v +f++
  Bradi4g02950.3.p  45 Q-QSISIPEKFANNFSGQ--IDKGCTLKVPSGETWRVGI--EKIADKLFFVSGWDAFAKAHELQEHDILFFKCSGSGSF--DVLIFDA 125
                       3.349*******888777..44558999***********..*******************************8876666..9999986 PP
2B339.41.1e-122853691394
                       TT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS...SEE..EE CS
                B3  13 sgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr...sefelvv 94 
                       +++ +++ kfa++h +g   ++ +l l+  + ++W vk+ y  +s r +  + W +Fv++n+L+eg +++F+l  g+   +++++++
  Bradi4g02950.3.p 285 LCLQIISSKFAADHlEGR--SQDMLLLRPNRKEKWYVKYYYHASSTRGFNCQRWVKFVRDNKLREGYICIFELLkGTrkaTTATMMI 369
                       466699********6444..333666777888*******99888888666679*******************652332023344455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.47E-2129128IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.92933126IPR003340B3 DNA binding domain
CDDcd100172.60E-1635124No hitNo description
SMARTSM010194.8E-936126IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-2036128IPR015300DNA-binding pseudobarrel domain
PfamPF023629.7E-1444125IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-16249370IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-15251369IPR015300DNA-binding pseudobarrel domain
CDDcd100171.24E-15255373No hitNo description
SMARTSM010191.3E-5272375IPR003340B3 DNA binding domain
PfamPF023626.8E-11286373IPR003340B3 DNA binding domain
PROSITE profilePS508639.361289375IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MAAAGKMMGE KGGCGRCREW QEHYYWEHMD VSKIRFSKIM AGDFQQSISI PEKFANNFSG  60
QIDKGCTLKV PSGETWRVGI EKIADKLFFV SGWDAFAKAH ELQEHDILFF KCSGSGSFDV  120
LIFDASGCEK VSSFFTDKKG TNMHKHFDHI VSQQAEEHYL LSDSGDVNMP PSPLVGSPHK  180
ASASNKPSGK TKPREESESP NDSDYRVKHE LTQEENDSDD EDTDSNKYYS RFANYLTLGE  240
REEIFGLASI QPGNPIFVAV LQKSHVRHRN NFLQLRSTGL NQKMLCLQII SSKFAADHLE  300
GRSQDMLLLR PNRKEKWYVK YYYHASSTRG FNCQRWVKFV RDNKLREGYI CIFELLKGTR  360
KATTATMMIH VIRKVDDRFV LLG*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g02950.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010237091.10.0B3 domain-containing protein Os12g0592300
SwissprotQ2QMT21e-154Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A2K2CK630.0A0A2K2CK63_BRADI; Uncharacterized protein
STRINGBRADI4G02950.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Representative plantOGRP6299819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-30B3 family protein