PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g02985.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 491aa    MW: 56321.5 Da    PI: 7.9219
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g02985.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.73.2e-1627115198
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       ffk++   + +++g + +p kf+++ gg    +  ++le+++g++ +v++   k ++  vl++GW+ F++  +L+egD + F+++g+s f  +
  Bradi4g02985.1.p  27 FFKIM--ISDFRNG-VNIPEKFVRSVGGH--IPELVKLETPDGNTHTVRV--AKEQNNLVLRSGWEIFASVYELEEGDLLRFRYSGDSHF--K 110
                       78888..7888887.***********877..5568***************..**********************************9999..7 PP

                       EEEE- CS
                B3  94 vkvfr 98 
                       v +++
  Bradi4g02985.1.p 111 VEIYD 115
                       77765 PP
2B336.68.3e-122793334498
                       -EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
                B3  44 rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                       ++  v +   k++++y+l++GW +Fv++n+L+egD++ F++ ++ ++f++ v+v++
  Bradi4g02985.1.p 279 KTLGVHF-EIKTDDTYILSAGWFGFVEDNELQEGDTCAFEVLKSqRSFTMAVHVLK 333
                       4444444.2577788*************************77666*******9986 PP
3B344.72.4e-14395486699
                       ..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
                B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                       t+ d +++++l+++ ++a++  +  +++  ++l    +++ W+ ++  +  s+r++l++GW++F  +n+L+ gD+++F+++++ ++ +++v++
  Bradi4g02985.1.p 395 TNIDGGRTSILSFSMDYARDDLLA-AGP-IIRLHRpGESKPWKATY--KIISNRCWLAGGWRRFTIENKLRLGDICLFERMENrKKLRMMVHI 483
                       678888899999999999777333.344.6888884555*******..999999*************************99888********* PP

                       E-S CS
                B3  97 frk 99 
                       +rk
  Bradi4g02985.1.p 484 IRK 486
                       *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.75E-2020119IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.9E-2221119IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.22324117IPR003340B3 DNA binding domain
CDDcd100174.48E-1925115No hitNo description
SMARTSM010191.1E-1327117IPR003340B3 DNA binding domain
PfamPF023627.8E-1427114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-11231333IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.14E-13232333IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.26238335IPR003340B3 DNA binding domain
PROSITE profilePS508639.798270335IPR003340B3 DNA binding domain
PfamPF023621.1E-8283333IPR003340B3 DNA binding domain
CDDcd100176.33E-7288333No hitNo description
Gene3DG3DSA:2.40.330.101.6E-15381487IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-18381487IPR015300DNA-binding pseudobarrel domain
CDDcd100178.89E-13386485No hitNo description
SMARTSM010196.4E-8388487IPR003340B3 DNA binding domain
PROSITE profilePS5086311.857390487IPR003340B3 DNA binding domain
PfamPF023621.2E-11395486IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MDKSCQECKE YIAHQYWHHM NNRKKRFFKI MISDFRNGVN IPEKFVRSVG GHIPELVKLE  60
TPDGNTHTVR VAKEQNNLVL RSGWEIFASV YELEEGDLLR FRYSGDSHFK VEIYDLSACE  120
KESSCVVMNC NPCLQKRSIP HDSPMRSPGD EKLATRHNGS CSNSCKTSKT NPAGSPIRKP  180
TEKDTPPSKG SQDPMDSDEL RTTTRSCYVL AIGCNLTKAH KAEIDELEQK NKSEIPLYVK  240
TMDRTSLVDG FLVRWQFHCL HYIISYNEII TLCHANHSKT LGVHFEIKTD DTYILSAGWF  300
GFVEDNELQE GDTCAFEVLK SQRSFTMAVH VLKEGFYHPP ASLQDLLLPP TVRPEDNVRF  360
TRFTTLEGLM KTEVYEKVEA IESGIPIFVS IMLKTNIDGG RTSILSFSMD YARDDLLAAG  420
PIIRLHRPGE SKPWKATYKI ISNRCWLAGG WRRFTIENKL RLGDICLFER MENRKKLRMM  480
VHIIRKEEYC *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g02985.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024318846.10.0LOW QUALITY PROTEIN: B3 domain-containing protein LOC_Os12g40080
TrEMBLA0A0Q3L1400.0A0A0Q3L140_BRADI; Uncharacterized protein
STRINGBRADI4G02990.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Representative plantOGRP5872421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-19B3 family protein