PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g03000.9.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 499aa    MW: 56377.4 Da    PI: 6.0353
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g03000.9.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.53.7e-16951701394
                       TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                       ++ +++p kf++++ g    s  +++e ++g+++++++  +k  +++vl++GW  F++ ++Lke D++vF+++g+s f+   
  Bradi4g03000.9.p  95 RQEMSIPEKFVNNFRGH--ISEVIKVEAPDGNVYSIQV--TKDLDKIVLGSGWAAFADTHELKEHDVLVFRYIGDSHFK--T 170
                       4569*******888655..5678***************..**********************************99994..3 PP
2B339.41.1e-12300383993
                       HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   9 dvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                        +l++  lv+ k +a +h   + ++  +tl + +s+++W+  +++  ++ +   ++ ++GW eFv++ +L+egD+++F+ ++++++  v
  Bradi4g03000.9.p 300 TSLSE-SLVICKAYAVKHLPHEDQP--ITLCHpQSSKTWDASFRVIIYGTSilpCITSTGWLEFVQDSKLQEGDICIFEISKSDGR--V 383
                       44444.5***********5444455..777774777****999887777776788899*********************7764444..3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.77E-2079178IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-1980178IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.57583176IPR003340B3 DNA binding domain
CDDcd100178.07E-1884173No hitNo description
SMARTSM010191.4E-686176IPR003340B3 DNA binding domain
PfamPF023626.2E-1495170IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-14288380IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-15288386IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.068291391IPR003340B3 DNA binding domain
CDDcd100171.70E-12291389No hitNo description
SMARTSM010194.2E-4293391IPR003340B3 DNA binding domain
PfamPF023623.2E-10301386IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MLVFRYIRDS HFKVLIFDYG SCCEKEVFHV VMNRGGPDAQ EGTHLDQSPP RRSQDGGPSN  60
GESHRRCEWC DAHYYWHHLD DRQKHFFRFM VGNFRQEMSI PEKFVNNFRG HISEVIKVEA  120
PDGNVYSIQV TKDLDKIVLG SGWAAFADTH ELKEHDVLVF RYIGDSHFKT IIFEPNGCEK  180
ELFHVVMNRA CNVGETGIFC DQPVPKEARC RYGGSHDNDN RKSKKKTPLH LPSPRSAEGV  240
ASSEDIQDTM NSCGLQETAE PLYVLAKECN LTTEQKAEVG ALVKKNRPGV PFYITALNKT  300
SLSESLVICK AYAVKHLPHE DQPITLCHPQ SSKTWDASFR VIIYGTSILP CITSTGWLEF  360
VQDSKLQEGD ICIFEISKSD GRVIMVIHSL EGGYHPPSKE PESQNNCEHL VKGEATDQDE  420
ESDDEHAEPD CYYSRFANYL TAEEQEEIFG LASIQLGNPV YVTVLCKSHV RGSNNMLVIH  480
NQFAAKHLAE RSHDILLL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g03000.9.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014758591.10.0B3 domain-containing protein LOC_Os12g40080 isoform X1
TrEMBLA0A0Q3EED10.0A0A0Q3EED1_BRADI; Uncharacterized protein
STRINGBRADI4G03000.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-21B3 family protein