PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g03303.3.p

Common Name

BRADI_4g03303

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

HB-other

Protein Properties

Length: 1089aa MW: 122295 Da PI: 6.5924

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g03303.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	39	1.3e-12	8	59	6	57
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + ++ q++ Le ++ + +yp+ +++ e A+++gL +qV++WF+ rR ke++ Bradi4g03303.3.p 8 KKSPLQIQMLEGFYSEVQYPKPDDMIEYASSVGLAYSQVRIWFKERRRKERR 59 66899*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	13.459	1	60	IPR001356	Homeobox domain
SMART	SM00389	4.6E-13	2	64	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.84E-12	6	62	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.8E-13	7	64	IPR009057	Homeodomain-like
CDD	cd00086	3.35E-7	7	50	No hit	No description
Pfam	PF00046	6.4E-10	8	59	IPR001356	Homeobox domain
SMART	SM00571	0.0068	339	398	IPR018501	DDT domain
PROSITE profile	PS50827	9.902	339	398	IPR018501	DDT domain
Pfam	PF02791	5.9E-7	341	393	IPR018501	DDT domain
Pfam	PF15612	1.9E-5	592	623	IPR028942	WHIM1 domain
Pfam	PF15613	1.4E-10	715	786	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1089 aa Download sequence Send to blast
MMTNAGTKKS PLQIQMLEGF YSEVQYPKPD DMIEYASSVG LAYSQVRIWF KERRRKERRQ 60 MEAAGALMET QVSARSNGPR SMSLVGEKHA LRPQVLYPKD YILAKVFRKD GPSLGSEFDP 120 LPKSAHGHVR VADTTEYHSD QDQRVVKKRK IVECTDQGFT LPCQSNGPVR KHGMGKGLMT 180 VWHAMYSKNA EVQDVSNFID ETGCLRSLRP FDDSDGKLIQ KFFLPRKKVD KKSRPPPSKR 240 KVPRGRVTVL KEHPAMECHL SVDESESSEL QTEQATLVDD EELELSELQA GPNPLRCSAH 300 LSSSGRHGCP LCKDLLARFP PPSVKMKEPF STKPWDSSPE MVKKLFQVVR FVYTHFGSMD 360 VHPFTFDEFA QAFHDKESSL LGKVHVSLLK LLMLNTKRDS GDVFVPRSSK DSRFISFLNF 420 VREQEFDVNF WIKSLNSLTW VEILRQVLVA SGFGSDHHML NRNFFNKEKN QMVKYGLRPR 480 TLKGELFALL SKKGIGGLKV SELAKSPQIV DLNLSGTSEV EQLIFSTLSS DITLFEKIAS 540 SAYRLRVDPR IKGKENPKSD TEDSGTVDDD EDASSSGDEY DGPEDEIDES YSGERWLLGL 600 MEGEYSDLSI DEKLDCLVAL MDVVSGAGSV PRLEEPQSVL SNIQRAQSHA SGGKIKKSTR 660 TIYQSSDEYL NRPGSSHSLD TSMQGQSGNR RSQDYISESA ANESSTAFAH QPQIVLLGSD 720 RRYNNYWLFL GPCRADDPGH RRVYFESSED GHWEVIDSPQ ELLSLLSLLD IRGTREAHLL 780 ASMKKRQACL FEGMKKHLED GNAVGVSASS DSSRSETSTP KLSSGDGASP LSDIDNASVP 840 TYLADNLLSA SSAIVIEAGR RGDEKILKWE RLQALDKWIW TSFYSSLIAV KCGKRSFKES 900 LVHCESCHDL YWRDEKHCRI CHSTFEVGFD LEERYAIHVA TCREPEDLYD VPNHKVLSSQ 960 LQALKAAIHA IEACMPESAF AGLWMKSSHN LWVRRLRRTS SLPELLQVLV DFVGAMDEDW 1020 LYESSSTSFC SYLDNITVYF QTMPQTTSAV ALWVVKLDAL IAPYLVQTDP DRALAEGSTK 1080 TRTQACVR*

Sequence ? help Back to Top

Protein Sequence Length: 1089 aa Download sequence Send to blast

MMTNAGTKKS PLQIQMLEGF YSEVQYPKPD DMIEYASSVG LAYSQVRIWF KERRRKERRQ  60
MEAAGALMET QVSARSNGPR SMSLVGEKHA LRPQVLYPKD YILAKVFRKD GPSLGSEFDP  120
LPKSAHGHVR VADTTEYHSD QDQRVVKKRK IVECTDQGFT LPCQSNGPVR KHGMGKGLMT  180
VWHAMYSKNA EVQDVSNFID ETGCLRSLRP FDDSDGKLIQ KFFLPRKKVD KKSRPPPSKR  240
KVPRGRVTVL KEHPAMECHL SVDESESSEL QTEQATLVDD EELELSELQA GPNPLRCSAH  300
LSSSGRHGCP LCKDLLARFP PPSVKMKEPF STKPWDSSPE MVKKLFQVVR FVYTHFGSMD  360
VHPFTFDEFA QAFHDKESSL LGKVHVSLLK LLMLNTKRDS GDVFVPRSSK DSRFISFLNF  420
VREQEFDVNF WIKSLNSLTW VEILRQVLVA SGFGSDHHML NRNFFNKEKN QMVKYGLRPR  480
TLKGELFALL SKKGIGGLKV SELAKSPQIV DLNLSGTSEV EQLIFSTLSS DITLFEKIAS  540
SAYRLRVDPR IKGKENPKSD TEDSGTVDDD EDASSSGDEY DGPEDEIDES YSGERWLLGL  600
MEGEYSDLSI DEKLDCLVAL MDVVSGAGSV PRLEEPQSVL SNIQRAQSHA SGGKIKKSTR  660
TIYQSSDEYL NRPGSSHSLD TSMQGQSGNR RSQDYISESA ANESSTAFAH QPQIVLLGSD  720
RRYNNYWLFL GPCRADDPGH RRVYFESSED GHWEVIDSPQ ELLSLLSLLD IRGTREAHLL  780
ASMKKRQACL FEGMKKHLED GNAVGVSASS DSSRSETSTP KLSSGDGASP LSDIDNASVP  840
TYLADNLLSA SSAIVIEAGR RGDEKILKWE RLQALDKWIW TSFYSSLIAV KCGKRSFKES  900
LVHCESCHDL YWRDEKHCRI CHSTFEVGFD LEERYAIHVA TCREPEDLYD VPNHKVLSSQ  960
LQALKAAIHA IEACMPESAF AGLWMKSSHN LWVRRLRRTS SLPELLQVLV DFVGAMDEDW  1020
LYESSSTSFC SYLDNITVYF QTMPQTTSAV ALWVVKLDAL IAPYLVQTDP DRALAEGSTK  1080
TRTQACVR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g03303.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK373981	0.0	AK373981.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3049P02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010237104.1	0.0	homeobox-DDT domain protein RLT3 isoform X1
TrEMBL	A0A0Q3EEJ1	0.0	A0A0Q3EEJ1_BRADI; Uncharacterized protein
STRING	MLOC_6327.3	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	1e-135	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Bradi4g03303.3.p