PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g03303.4.p

Common Name

BRADI_4g03303

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

HB-other

Protein Properties

Length: 1068aa MW: 119946 Da PI: 6.5136

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g03303.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	39.1	1.3e-12	8	59	6	57
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + ++ q++ Le ++ + +yp+ +++ e A+++gL +qV++WF+ rR ke++ Bradi4g03303.4.p 8 KKSPLQIQMLEGFYSEVQYPKPDDMIEYASSVGLAYSQVRIWFKERRRKERR 59 66899*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	13.459	1	60	IPR001356	Homeobox domain
SMART	SM00389	4.6E-13	2	64	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.84E-12	6	62	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.7E-13	7	64	IPR009057	Homeodomain-like
CDD	cd00086	3.50E-7	7	50	No hit	No description
Pfam	PF00046	6.2E-10	8	59	IPR001356	Homeobox domain
SMART	SM00571	0.0068	292	351	IPR018501	DDT domain
PROSITE profile	PS50827	9.902	292	351	IPR018501	DDT domain
Pfam	PF02791	5.8E-7	294	346	IPR018501	DDT domain
Pfam	PF15612	1.9E-5	571	602	IPR028942	WHIM1 domain
Pfam	PF15613	1.4E-10	694	765	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1068 aa Download sequence Send to blast
MMTNAGTKKS PLQIQMLEGF YSEVQYPKPD DMIEYASSVG LAYSQVRIWF KERRRKERRQ 60 MEAAGALMET QVSARSNGPR SMSLVGEKHA LRPQVLYPKD YILAKVFRKD GPSLGSEFDP 120 LPKSAHGHVR VADTTEYHSD QDQRVVKKRK IVECTDQGFT LPCQSNGPVR KHGMGKGCLR 180 SLRPFDDSDG KLIQVPRGRV TVLKEHPAME CHLSVDESES SELQTEQATL VDDEELELSE 240 LQAGPNPLRC SAHLSSSGRH GCPLCKDLLA RFPPPSVKMK EPFSTKPWDS SPEMVKKLFQ 300 VVRFVYTHFG SMDVHPFTFD EFAQAFHDKE SSLLGKVHVS LLKLLMLNTK RDSGDVFVPR 360 SSKDSRFISF LNFVREQEFD VNFWIKSLNS LTWVEILRQV LVASGFGSDH HMLNRNFFNK 420 EKNQMVKYGL RPRTLKGELF ALLSKKGIGG LKVSELAKSP QIVDLNLSGT SEVEQLIFST 480 LSSDITLFEK IASSAYRLRV DPRIKGKENP KSDTEDSGTV DDDEDASSSG DEYDGPEELS 540 FSEHESRIVR RKQKNEHKTM NKCSEIDESY SGERWLLGLM EGEYSDLSID EKLDCLVALM 600 DVVSGAGSVP RLEEPQSVLS NIQRAQSHAS GGKIKKSTRT IYQSSDEYLN RPGSSHSLDT 660 SMQGQSGNRR SQDYISESAA NESSTAFAHQ PQIVLLGSDR RYNNYWLFLG PCRADDPGHR 720 RVYFESSEDG HWEVIDSPQE LLSLLSLLDI RGTREAHLLA SMKKRQACLF EGMKKHLEDG 780 NAVGVSASSD SSRSETSTPK LSSGDGASPL SDIDNASVPT YLADNLLSAS SAIVIEAGRR 840 GDEKILKWER LQALDKWIWT SFYSSLIAVK CGKRSFKESL VHCESCHDLY WRDEKHCRIC 900 HSTFEVGFDL EERYAIHVAT CREPEDLYDV PNHKVLSSQL QALKAAIHAI EACMPESAFA 960 GLWMKSSHNL WVRRLRRTSS LPELLQVLVD FVGAMDEDWL YESSSTSFCS YLDNITVYFQ 1020 TMPQTTSAVA LWVVKLDALI APYLVQTDPD RALAEGSTKT RTQACVR*

Sequence ? help Back to Top

Protein Sequence Length: 1068 aa Download sequence Send to blast

MMTNAGTKKS PLQIQMLEGF YSEVQYPKPD DMIEYASSVG LAYSQVRIWF KERRRKERRQ  60
MEAAGALMET QVSARSNGPR SMSLVGEKHA LRPQVLYPKD YILAKVFRKD GPSLGSEFDP  120
LPKSAHGHVR VADTTEYHSD QDQRVVKKRK IVECTDQGFT LPCQSNGPVR KHGMGKGCLR  180
SLRPFDDSDG KLIQVPRGRV TVLKEHPAME CHLSVDESES SELQTEQATL VDDEELELSE  240
LQAGPNPLRC SAHLSSSGRH GCPLCKDLLA RFPPPSVKMK EPFSTKPWDS SPEMVKKLFQ  300
VVRFVYTHFG SMDVHPFTFD EFAQAFHDKE SSLLGKVHVS LLKLLMLNTK RDSGDVFVPR  360
SSKDSRFISF LNFVREQEFD VNFWIKSLNS LTWVEILRQV LVASGFGSDH HMLNRNFFNK  420
EKNQMVKYGL RPRTLKGELF ALLSKKGIGG LKVSELAKSP QIVDLNLSGT SEVEQLIFST  480
LSSDITLFEK IASSAYRLRV DPRIKGKENP KSDTEDSGTV DDDEDASSSG DEYDGPEELS  540
FSEHESRIVR RKQKNEHKTM NKCSEIDESY SGERWLLGLM EGEYSDLSID EKLDCLVALM  600
DVVSGAGSVP RLEEPQSVLS NIQRAQSHAS GGKIKKSTRT IYQSSDEYLN RPGSSHSLDT  660
SMQGQSGNRR SQDYISESAA NESSTAFAHQ PQIVLLGSDR RYNNYWLFLG PCRADDPGHR  720
RVYFESSEDG HWEVIDSPQE LLSLLSLLDI RGTREAHLLA SMKKRQACLF EGMKKHLEDG  780
NAVGVSASSD SSRSETSTPK LSSGDGASPL SDIDNASVPT YLADNLLSAS SAIVIEAGRR  840
GDEKILKWER LQALDKWIWT SFYSSLIAVK CGKRSFKESL VHCESCHDLY WRDEKHCRIC  900
HSTFEVGFDL EERYAIHVAT CREPEDLYDV PNHKVLSSQL QALKAAIHAI EACMPESAFA  960
GLWMKSSHNL WVRRLRRTSS LPELLQVLVD FVGAMDEDWL YESSSTSFCS YLDNITVYFQ  1020
TMPQTTSAVA LWVVKLDALI APYLVQTDPD RALAEGSTKT RTQACVR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g03303.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK373981	0.0	AK373981.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3049P02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024310464.1	0.0	homeobox-DDT domain protein RLT3 isoform X3
TrEMBL	A0A0Q3EEN8	0.0	A0A0Q3EEN8_BRADI; Uncharacterized protein
STRING	MLOC_6327.3	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	1e-137	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Bradi4g03303.4.p