PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g03303.7.p

Common Name

BRADI_4g03303, LOC100825161

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

HB-other

Protein Properties

Length: 1094aa MW: 122915 Da PI: 6.3927

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g03303.7.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	39	1.3e-12	8	59	6	57
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + ++ q++ Le ++ + +yp+ +++ e A+++gL +qV++WF+ rR ke++ Bradi4g03303.7.p 8 KKSPLQIQMLEGFYSEVQYPKPDDMIEYASSVGLAYSQVRIWFKERRRKERR 59 66899*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	13.459	1	60	IPR001356	Homeobox domain
SMART	SM00389	4.6E-13	2	64	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.84E-12	6	62	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.9E-13	7	64	IPR009057	Homeodomain-like
CDD	cd00086	3.44E-7	7	50	No hit	No description
Pfam	PF00046	6.4E-10	8	59	IPR001356	Homeobox domain
SMART	SM00571	0.0068	318	377	IPR018501	DDT domain
PROSITE profile	PS50827	9.902	318	377	IPR018501	DDT domain
Pfam	PF02791	6.0E-7	320	372	IPR018501	DDT domain
Pfam	PF15612	1.9E-5	597	628	IPR028942	WHIM1 domain
Pfam	PF15613	1.5E-10	720	791	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1094 aa Download sequence Send to blast
MMTNAGTKKS PLQIQMLEGF YSEVQYPKPD DMIEYASSVG LAYSQVRIWF KERRRKERRQ 60 MEAAGALMET QVSARSNGPR SMSLVGEKHA LRPQVLYPKD YILAKVFRKD GPSLGSEFDP 120 LPKSAHGHVR VADTTEYHSD QDQRVVKKRK IVECTDQGFT LPCQSNGPVR KHGMGKGLMT 180 VWHAMYSKNA EVQDVSNFID ETGCLRSLRP FDDSDGKLIQ VPRGRVTVLK EHPAMECHLS 240 VDESESSELQ TEQATLVDDE ELELSELQAG PNPLRCSAHL SSSGRHGCPL CKDLLARFPP 300 PSVKMKEPFS TKPWDSSPEM VKKLFQVVRF VYTHFGSMDV HPFTFDEFAQ AFHDKESSLL 360 GKVHVSLLKL LMLNTKRDSG DVFVPRSSKD SRFISFLNFV REQEFDVNFW IKSLNSLTWV 420 EILRQVLVAS GFGSDHHMLN RNFFNKEKNQ MVKYGLRPRT LKGELFALLS KKGIGGLKVS 480 ELAKSPQIVD LNLSGTSEVE QLIFSTLSSD ITLFEKIASS AYRLRVDPRI KGKENPKSDT 540 EDSGTVDDDE DASSSGDEYD GPEELSFSEH ESRIVRRKQK NEHKTMNKCS EIDESYSGER 600 WLLGLMEGEY SDLSIDEKLD CLVALMDVVS GAGSVPRLEE PQSVLSNIQR AQSHASGGKI 660 KKSTRTIYQS SDEYLNRPGS SHSLDTSMQG QSGNRRSQDY ISESAANESS TAFAHQPQIV 720 LLGSDRRYNN YWLFLGPCRA DDPGHRRVYF ESSEDGHWEV IDSPQELLSL LSLLDIRGTR 780 EAHLLASMKK RQACLFEGMK KHLEDGNAVG VSASSDSSRS ETSTPKLSSG DGASPLSDID 840 NASVPTYLAD NLLSASSAIV IEAGRRGDEK ILKWERLQAL DKWIWTSFYS SLIAVKCGKR 900 SFKESLVHCE SCHDLYWRDE KHCRICHSTF EVGFDLEERY AIHVATCREP EDLYDVPNHK 960 VLSSQLQALK AAIHAIEACM PESAFAGLWM KSSHNLWVRR LRRTSSLPEL LQVLVDFVGA 1020 MDEDWLYESS STSFCSYLDN ITVYFQTMPQ TTSAVALWVV KLDALIAPYL VQTDPDRALA 1080 EGSTKTRTQA CVR*

Sequence ? help Back to Top

Protein Sequence Length: 1094 aa Download sequence Send to blast

MMTNAGTKKS PLQIQMLEGF YSEVQYPKPD DMIEYASSVG LAYSQVRIWF KERRRKERRQ  60
MEAAGALMET QVSARSNGPR SMSLVGEKHA LRPQVLYPKD YILAKVFRKD GPSLGSEFDP  120
LPKSAHGHVR VADTTEYHSD QDQRVVKKRK IVECTDQGFT LPCQSNGPVR KHGMGKGLMT  180
VWHAMYSKNA EVQDVSNFID ETGCLRSLRP FDDSDGKLIQ VPRGRVTVLK EHPAMECHLS  240
VDESESSELQ TEQATLVDDE ELELSELQAG PNPLRCSAHL SSSGRHGCPL CKDLLARFPP  300
PSVKMKEPFS TKPWDSSPEM VKKLFQVVRF VYTHFGSMDV HPFTFDEFAQ AFHDKESSLL  360
GKVHVSLLKL LMLNTKRDSG DVFVPRSSKD SRFISFLNFV REQEFDVNFW IKSLNSLTWV  420
EILRQVLVAS GFGSDHHMLN RNFFNKEKNQ MVKYGLRPRT LKGELFALLS KKGIGGLKVS  480
ELAKSPQIVD LNLSGTSEVE QLIFSTLSSD ITLFEKIASS AYRLRVDPRI KGKENPKSDT  540
EDSGTVDDDE DASSSGDEYD GPEELSFSEH ESRIVRRKQK NEHKTMNKCS EIDESYSGER  600
WLLGLMEGEY SDLSIDEKLD CLVALMDVVS GAGSVPRLEE PQSVLSNIQR AQSHASGGKI  660
KKSTRTIYQS SDEYLNRPGS SHSLDTSMQG QSGNRRSQDY ISESAANESS TAFAHQPQIV  720
LLGSDRRYNN YWLFLGPCRA DDPGHRRVYF ESSEDGHWEV IDSPQELLSL LSLLDIRGTR  780
EAHLLASMKK RQACLFEGMK KHLEDGNAVG VSASSDSSRS ETSTPKLSSG DGASPLSDID  840
NASVPTYLAD NLLSASSAIV IEAGRRGDEK ILKWERLQAL DKWIWTSFYS SLIAVKCGKR  900
SFKESLVHCE SCHDLYWRDE KHCRICHSTF EVGFDLEERY AIHVATCREP EDLYDVPNHK  960
VLSSQLQALK AAIHAIEACM PESAFAGLWM KSSHNLWVRR LRRTSSLPEL LQVLVDFVGA  1020
MDEDWLYESS STSFCSYLDN ITVYFQTMPQ TTSAVALWVV KLDALIAPYL VQTDPDRALA  1080
EGSTKTRTQA CVR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g03303.7.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK373981	0.0	AK373981.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3049P02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024310464.1	0.0	homeobox-DDT domain protein RLT3 isoform X3
TrEMBL	A0A2K2CK88	0.0	A0A2K2CK88_BRADI; Uncharacterized protein
STRING	MLOC_6327.3	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	1e-137	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Bradi4g03303.7.p
Entrez Gene	100825161