PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g04050.2.p
Common NameBRADI_4g04050
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 201aa    MW: 22420.2 Da    PI: 6.1119
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g04050.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.11.3e-1042672148
                      TT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding 21 ggtWktIartmgkgRtlkqcksrwqkyl 48
                      ++ W++Iar+++ gRt++++k++w++++
  Bradi4g04050.2.p 42 NR-WSRIARRLP-GRTDNEIKNYWRTHM 67
                      55.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.11E-93472IPR009057Homeodomain-like
CDDcd001671.75E-83467No hitNo description
PROSITE profilePS500907.2943667IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.1E-134168IPR009057Homeodomain-like
PfamPF002496.6E-84266IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MKNVSSSSSM LGGETGLIQP TIQLTYGSTA SLNHIFGVSL SNRWSRIARR LPGRTDNEIK  60
NYWRTHMRKK AQERKRSMSP SSSSSSLTYQ SCNPETPSIT GIDEQELHGG SNCITSILKG  120
MPVDMDGYLM DQIWMEIEAP EAPSEPSFHD GKDNLYNSAS GPLLPSPMWD YYCTEPRWKT  180
DDDIKMAPQF GYSKGMDPCY *
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g04050.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010237138.11e-117myb-related protein MYBAS2
SwissprotQ4JL762e-74MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBLI1IHB11e-147I1IHB1_BRADI; Uncharacterized protein
STRINGBRADI4G04050.11e-116(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.13e-19myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]