PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g04720.1.p

Common Name

BRADI_4g04720, LOC100829753

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bZIP

Protein Properties

Length: 160aa MW: 17449.6 Da PI: 9.6806

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g04720.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46.4	8.6e-15	32	90	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +re+r+ +NRe+ArrsR+RK++ ++eL ++v+ L+aeN + +++ + ++ ++++e+ Bradi4g04720.1.p 32 RREKRRLSNRESARRSRLRKQQHLDELVQEVARLKAENARVLGRANDIAGQYVRVEQEN 90 79*************************************99999998888887777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-17	28	92	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.093	30	93	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.8E-10	30	72	No hit	No description
Pfam	PF00170	2.2E-11	32	89	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.5E-10	32	83	No hit	No description
CDD	cd14702	1.50E-16	33	83	No hit	No description
PROSITE pattern	PS00036	0	35	50	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006971	Biological Process	hypotonic response
GO:0009267	Biological Process	cellular response to starvation
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000693	Biological Process	positive regulation of seed maturation
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MSSSSLSPGG RLSGSDGDSG GAPMGGGGGD KRREKRRLSN RESARRSRLR KQQHLDELVQ 60 EVARLKAENA RVLGRANDIA GQYVRVEQEN TVLRARAAEL GDRLRSVNQV LRVVEDFSGV 120 AMDIQEECPP DDPLLRPWQI PYPATAMPIA ATATHMLQY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	29	37	DKRREKRRL
2	30	37	KRREKRRL
3	44	50	RRSRLRK
4	44	51	RRSRLRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	May contribute to developmentally specific patterns of gene expression. Binds specifically to ocs elements which are transcriptional enhancer found in the promoters of several plant genes. OCSBF-1 is able to bind to a site within each half of the ocs element as well as to animal AP-1 and CREB sites.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00419	DAP	Transfer from AT3G62420	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g04720.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB334131	0.0	AB334131.1 Triticum aestivum TaOBF1d mRNA for basic region/leucine zipper protein, complete cds.
GenBank	AK372715	0.0	AK372715.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3010F11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003579247.1	1e-112	ocs element-binding factor 1
Swissprot	P24068	2e-80	OCS1_MAIZE; Ocs element-binding factor 1
TrEMBL	I1IHI8	1e-111	I1IHI8_BRADI; Uncharacterized protein
STRING	BRADI4G04720.1	1e-112	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1886	35	100
Representative plant	OGRP551	16	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G62420.1	2e-31	basic region/leucine zipper motif 53

Link Out ? help Back to Top
Phytozome	Bradi4g04720.1.p
Entrez Gene	100829753

Publications ? help Back to Top
Singh K, et al. OCSBF-1, a maize ocs enhancer binding factor: isolation and expression during development. Plant Cell, 1990. 2(9): p. 891-903 [PMID:2152133]