PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g06567.3.p
Common NameLOC100821427
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 179aa    MW: 20362.8 Da    PI: 6.5137
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g06567.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.11e-101111501054
                       HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++RR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k L
  Bradi4g06567.3.p 111 KKRRQRINERLRILQKLIPNG-----TKVDISTMLEEAVQYVKFL 150
                       9******************97.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.109.9E-1398162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-1499165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.135101150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-9107156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.14E-8110155No hitNo description
PfamPF000104.8E-8111150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MEAAECASYW SSLDAISEES EMLLHLQSLL RCSSDSDTSF FSSNNESANA SFDHQVDNLS  60
SPDERNIGIK RKFQVDQERD HDNEVHAALS APRKNGKKSR AAKDSQSHYA KKRRQRINER  120
LRILQKLIPN GTKVDISTML EEAVQYVKFL HLQIKLLSSD EMWMYAPLAC NQESLSRE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g06567.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003575488.11e-129transcription factor bHLH84
SwissprotQ7XHI95e-36BH084_ARATH; Transcription factor bHLH84
TrEMBLI1II471e-128I1II47_BRADI; Uncharacterized protein
STRINGBRADI4G06567.11e-129(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145082123
Representative plantOGRP10481454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.15e-38bHLH family protein