PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g07527.1.p
Common NameBRADI_4g07527, LOC100836791
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 253aa    MW: 27326.9 Da    PI: 9.4639
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g07527.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM146.91e-45161481128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                       lppGfrF+Ptdeelvv+yL++++ +++l+++  i++v+++ ++P+dL p     +e+e yfF+++++ky +g r+nrat +gyWkatgk+k+v
  Bradi4g07527.1.p  16 LPPGFRFRPTDEELVVHYLRRRALSSPLPAAVDIPDVRLLAHDPSDLlP--PGWSEEERYFFTCKESKYVKGCRANRATGAGYWKATGKEKPV 106
                       79***************************9666**************43..34478999********************************** PP

               NAM  93 lsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ++         +vg+k++Lvfy+g+ap+g+ktdWvmheyrl
  Bradi4g07527.1.p 107 AVSvpaakgAAVVVGMKRSLVFYRGKAPSGKKTDWVMHEYRL 148
                       *998887665666***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-5012179IPR003441NAC domain
PROSITE profilePS5100549.89816179IPR003441NAC domain
PfamPF023651.0E-2617148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
METKESTVAA DASRRLPPGF RFRPTDEELV VHYLRRRALS SPLPAAVDIP DVRLLAHDPS  60
DLLPPGWSEE ERYFFTCKES KYVKGCRANR ATGAGYWKAT GKEKPVAVSV PAAKGAAVVV  120
GMKRSLVFYR GKAPSGKKTD WVMHEYRLAG AGLAPCRLAQ AAANANPEEG WVLCRVFRKK  180
KGAAAAADTG DIQDPAPEDD GGGAQSGVRF IDFFARAESR RRRAASPVSS SCVTDASAEH  240
CREQQETTSR GC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-40101819170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g07527.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0939161e-157FP093916.1 Phyllostachys edulis cDNA clone: bphyem121f24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003575526.10.0NAC domain-containing protein 83
SwissprotQ9FY932e-53NAC83_ARATH; NAC domain-containing protein 83
TrEMBLI1IIG70.0I1IIG7_BRADI; Uncharacterized protein
STRINGBRADI4G07527.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63173254
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-50NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]