PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g08050.2.p
Common NameBRADI_4g08050, LOC100841070
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 446aa    MW: 47981.8 Da    PI: 8.1357
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g08050.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.43.7e-115882327
                      S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                      ++ C++++rtG C++G +CkF+H+p
  Bradi4g08050.2.p 58 EPDCSYYMRTGLCRFGMTCKFNHPP 82
                      789********************97 PP
2zf-CCCH38.81.5e-12103127327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       +++C+++++tGtCk+G++CkF+H++
  Bradi4g08050.2.p 103 QPECQYYLKTGTCKFGATCKFHHPR 127
                       799********************96 PP
3zf-CCCH314.2e-10149173327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       +++C +++rtG+Ck+ ++CkF+H++
  Bradi4g08050.2.p 149 EKECAYYLRTGQCKFASTCKFHHPQ 173
                       679********************97 PP
4zf-CCCH406.6e-13310335227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++C+f+++tG Ck+G+ CkF+H++
  Bradi4g08050.2.p 310 DQPECQFYMKTGDCKFGAVCKFNHPK 335
                       689*********************96 PP
5zf-CCCH37.53.9e-12355381127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++ C f++r+G+Ck+G++CkF H++
  Bradi4g08050.2.p 355 PGEPVCTFYSRYGICKFGPNCKFDHPM 381
                       5789*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.8E-55582IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2815583IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-85882IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-56083IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-46181IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.441100128IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-6100127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6102129IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-10103127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-5106128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-6146174IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.324146174IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-4146173IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-7149173IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.455308336IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-5308335IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9310335IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5311337IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4314336IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6353380IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7354381IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99354382IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9356381IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-4359379IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MAAAGAGSGG EGSSSPAALA IGTHHGPTED IAETMWQMSL GGGGESMEPG PYPERIGEPD  60
CSYYMRTGLC RFGMTCKFNH PPNRKLAVAA ARMNGEYPYR VGQPECQYYL KTGTCKFGAT  120
CKFHHPREKA AIATRAQLNV LGYPLRPNEK ECAYYLRTGQ CKFASTCKFH HPQPSSTMVA  180
VRGSMYSPGQ SATSPGQNTY PGAVTNWNMS RSASFIASPR WPGHSGYAQV IVPQSIVQVP  240
GWNPYAAQIG SSSPDDQQRT PGTTHYYSGS RQSETTGMGD HGMFPSYQAG SVPLGVYAVQ  300
GDNVFPERPD QPECQFYMKT GDCKFGAVCK FNHPKERMIP APNCALSPLG LPLRPGEPVC  360
TFYSRYGICK FGPNCKFDHP MGTVMYGSVT SPTSDVPTLH YQLAPSPGHS ERLLDGGGSG  420
RSHRVPQSDS QHIPTGDGST EREAS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g08050.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010237293.10.0zinc finger CCCH domain-containing protein 66 isoform X1
SwissprotQ2QT650.0C3H66_ORYSJ; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A0Q3IKS40.0A0A0Q3IKS4_BRADI; Uncharacterized protein
STRINGBRADI4G08050.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Representative plantOGRP12471750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-146zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]