PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g09252.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 395aa    MW: 43832.3 Da    PI: 9.7935
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g09252.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS137.81.1e-422233782159
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkf 93 
                        +lL++cAeav  +d ++a++lL++++ ++sp gd+ qRla+y++++L+arla+++++ly++    ++    ++ + + a++l+ +++ ++k+
  Bradi4g09252.1.p 223 DKLLIRCAEAVFRNDRRNASELLEQIKRHSSPLGDARQRLAHYLAQGLEARLASTGNKLYRSPiGNRAL---STFQLFRAYRLYIDTCCFVKI 312
                       689*********************************************************866344444...4889999************** PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeele 159
                       s+l  N++I++av+g+e++Hi+ ++i+ GlQWpaL++ La+R++gpp+lRiT ++ p+++sk+  +
  Bradi4g09252.1.p 313 SFLFSNKTIYNAVAGKEKLHIVHYGINTGLQWPALIRWLAEREGGPPELRITSINTPQQFSKHVRR 378
                       **********************************************************99776555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098528.431196394IPR005202Transcription factor GRAS
PfamPF035143.8E-40223378IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MNQLHTQIHT YSQGWTHQLL TSKPQHITPQ ARLGAYLLTT SAVVAAAAPF TRHAGHLELL  60
LLLLRRHAEN QHLGLGSAGG AALLCQAHKD HTVFSTGTGA VDPKSTLFPS ESSISMDMLP  120
SMAFFKGMEE AKMLLPGDFV VVDSKNKFNM DGETEPGMGS KQIAALVDTD SESEETVLEI  180
LARLMLKACE GEMHINKDNM AAQKSICRRG RDGARQTGVT DLDKLLIRCA EAVFRNDRRN  240
ASELLEQIKR HSSPLGDARQ RLAHYLAQGL EARLASTGNK LYRSPIGNRA LSTFQLFRAY  300
RLYIDTCCFV KISFLFSNKT IYNAVAGKEK LHIVHYGINT GLQWPALIRW LAEREGGPPE  360
LRITSINTPQ QFSKHVRRAI QVPRHRSQAR GCER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-1822836825167Protein SCARECROW
5b3h_A2e-1822836824166Protein SCARECROW
5b3h_D2e-1822836824166Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g09252.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003575624.31e-122scarecrow-like protein 33
TrEMBLA0A2K2CLI20.0A0A2K2CLI2_BRADI; Uncharacterized protein
STRINGBRADI4G09235.11e-122(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.13e-40SCARECROW-like 14