PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g09410.1.p
Common NameBRADI_4g09410, LOC104584886
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 151aa    MW: 16670.9 Da    PI: 10.5273
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g09410.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.000274769123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+C  Cg++F++   L  H  +H
  Bradi4g09410.1.p 47 YECRSCGRRFKTFQALGGHRTSH 69
                      99**********99999888877 PP
2zf-C2H213.90.0001687109123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C+ Cg +F +   L  H+r+H
  Bradi4g09410.1.p  87 HRCGTCGLVFGTGQALGGHMRRH 109
                       79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.9464774IPR007087Zinc finger, C2H2
SMARTSM003550.44769IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.63E-747109No hitNo description
PfamPF139128.4E-94770IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.01487114IPR007087Zinc finger, C2H2
SMARTSM003550.2187109IPR015880Zinc finger, C2H2-like
PfamPF139128.3E-987109IPR007087Zinc finger, C2H2
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MDDVVRRRLL QLVLMLSSSP APASKVIAKK KKIKSRKHLH DEEDGGYECR SCGRRFKTFQ  60
ALGGHRTSHN RRPPTAGSRK LAAAAEHRCG TCGLVFGTGQ ALGGHMRRHF TRPPAAAAWS  120
TEAMASAGRR EEEDDDDDHD AWVPRLIQFI *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g09410.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238980.11e-108zinc finger protein ZAT11
TrEMBLI1IJ531e-106I1IJ53_BRADI; Uncharacterized protein
STRINGBRADI4G09410.11e-107(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67302650
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-18C2H2 family protein