PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g09490.2.p
Common NameBRADI_4g09490, LOC100842686
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 207aa    MW: 22877.8 Da    PI: 8.1174
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g09490.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.27.1e-173377248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      gr++++E+ l++++++++G++ W++Ia +++ gRt++++k++w++++
  Bradi4g09490.2.p 33 GRMSPQEEHLIIELHARWGNR-WSRIAGRLP-GRTDNEIKNYWRTHM 77
                      89*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.4261226IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.6E-91239IPR009057Homeodomain-like
SuperFamilySSF466892.17E-211283IPR009057Homeodomain-like
PROSITE profilePS5129425.0522781IPR017930Myb domain
SMARTSM007173.0E-143179IPR001005SANT/Myb domain
PfamPF002491.6E-153376IPR001005SANT/Myb domain
CDDcd001672.13E-113477No hitNo description
Gene3DG3DSA:1.10.10.601.4E-204078IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MDRAGGPATG LNRTGKSCRL RWVNYLHPGL KHGRMSPQEE HLIIELHARW GNRWSRIAGR  60
LPGRTDNEIK NYWRTHMRKK AQERTTDMSP SSSCSSFTYQ SGLIQIAPIT GKEEGSASNG  120
STSISSVLKS NQSVMDGYSM DQIWREIEAP AMLPIDDKAC GNLACPLLPS PVGDCYYSEV  180
VWKMDDYDTK ILAPEIGYVT GGGSCY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-17138137105MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-17138137105C-Myb DNA-Binding Domain
1msf_C5e-17138137105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g09490.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3672181e-144AK367218.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2053B03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577218.11e-154myb-related protein MYBAS1 isoform X2
SwissprotQ53NK62e-87MYBA1_ORYSJ; Myb-related protein MYBAS1
TrEMBLI1IJ631e-152I1IJ63_BRADI; Uncharacterized protein
STRINGBRADI4G09490.11e-146(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.34e-54myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]