PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g09552.1.p

Common Name

BRADI_4g09552

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 106aa MW: 11926.2 Da PI: 7.4522

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g09552.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	26	3.1e-08	61	103	4	47
FAR1 4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47 +YA+ GF +r+++++ ++ge+ +++fvC+k gk+++ k++ Bradi4g09552.1.p 61 VNYARWNGFGIRIDYQRPI-KSGETSQAQFVCYKAGKNKKAKED 103 68**********99988.7888*************98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-5	61	103	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 106 aa Download sequence Send to blast
MSVLAHCHQS QCCIDQLKKR TDGRENNEDN DDDAGDGISP PKKPEDNMKF DTIEAAKQHH 60 VNYARWNGFG IRIDYQRPIK SGETSQAQFV CYKAGKNKKA KEDTL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g09552.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024310413.1	3e-37	uncharacterized protein LOC104585121
TrEMBL	A0A0Q3PD93	8e-74	A0A0Q3PD93_BRADI; Uncharacterized protein
STRING	BRADI2G31180.1	4e-34	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9528	8	43

Link Out ? help Back to Top
Phytozome	Bradi4g09552.1.p