PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g11116.2.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family E2F/DP
Protein Properties Length: 401aa    MW: 45214.9 Da    PI: 9.8394
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g11116.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP65.19.3e-2164129171
           E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                       rk++sL++l++kf++l+  +  ++v l++ a++L   +v   rRRiYDi+NVLe+++++ +++kne++w+g
  Bradi4g11116.2.p  64 RKQQSLKVLCTKFVALYDDKGVEAVGLDNTARRL---SV--GRRRIYDIVNVLESVGMLVRRAKNEYTWIG 129
                       799****************999************...99..****************************98 PP
2E2F_TDP73.72e-23196276171
           E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                       +k ksL+ ltq+f+kl+ + e ++++l+eva+ L+ e     +++ k+RR+YDi+NVL++l+liek     ++k+ irw g
  Bradi4g11116.2.p 196 KKAKSLGRLTQNFVKLFLTMEIETISLDEVASLLLGEgqaegNMRAKVRRLYDIANVLSSLELIEKksqedTRKPTIRWLG 276
                       689***************************************************************9999999******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.1E-2361130IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.24E-1463128IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013727.6E-2264129IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.3E-1865129IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.8E-22192278IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.7E-28196276IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023194.2E-19197276IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.98E-12199277IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MDTPAAAAAA QANKPYHLRA RPARSSSRLL QLQQADGGGS SAARSSRRLL QLHGDGGEER  60
PYDRKQQSLK VLCTKFVALY DDKGVEAVGL DNTARRLSVG RRRIYDIVNV LESVGMLVRR  120
AKNEYTWIGF QGIPAALNEI KFGQEKALGE MKPPPQEPSA TNVSDNDEED KSDDSDWDAD  180
REKPDRCCCH RRSDHKKAKS LGRLTQNFVK LFLTMEIETI SLDEVASLLL GEGQAEGNMR  240
AKVRRLYDIA NVLSSLELIE KKSQEDTRKP TIRWLGPSKQ KERNDVTVDL LPTRKTLSRN  300
RALKSTDIPR IGLRTYGNPQ EQAKSSGFLF RASHPTGSKK QELGNHITEK ERKSIEDWES  360
LATTHRPRYE NKAVNDLFRN YVDVWKSWHS DFMRGTPSDP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A3e-32642704232Transcription factor E2F8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g11116.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024310302.10.0E2F transcription factor-like E2FE
TrEMBLA0A2K2CM220.0A0A2K2CM22_BRADI; Uncharacterized protein
STRINGMLOC_67050.11e-132(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Representative plantOGRP24741634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.23e-69DP-E2F-like 1