PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g11517.2.p

Common Name

BRADI_4g11517, LOC100839444

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

HB-other

Protein Properties

Length: 926aa MW: 102389 Da PI: 6.1538

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g11517.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	14.3	7.1e-05	688	748	1	54
TT--SS--HHHHHHHHHHHHHSSS-..-HHHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknryp..saeereeLAkkl.....gLterqVkvWFqNrRak 54 r+kRt +++ q++e e++ ++ + +a+ + A+kl ++t +q k+W Nr+ak Bradi4g11517.2.p 688 RKKRTIMNDGQINEIENALVGEPEMhrNATLLQAWAEKLsgqgsEITSSQLKNWLNNRKAK 748 89**************9986666114556899999999999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.1E-6	670	749	IPR009057	Homeodomain-like
PROSITE profile	PS50071	9.961	685	752	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 926 aa Download sequence Send to blast
MPPSPPAPPS PRSRGLGVPV SEMIDMVSAI EELSGLTSRE LSEMLKESES FVLQCKAEDG 60 GPKQVDMEKL VSSLPRHLLA VCLELGSGSE LTYVLRGMRF LHSLSELATR HTRLEQVLDD 120 VKLSVQVVDL IFFVLSILSN SKKENHLGAS PFIHSSLVAA SLHLLTSYFP SQYNELVSIL 180 LAHPEVDIFM DLAFDSLHED MRLLSRRLST FGTDAFPVGP LESQLTHFIC QQCETSLQLL 240 LLLCQQKLFR DRILENKDLC RNGRILSLSL TILKLGVPEC LKGSAHIASS ISRLKAKVLS 300 IVVQLCEAEG ISYLDEVATL PKSMQLGQTF ALKVLDLLKT AFGRKEKSVA GSHDKSYPMG 360 SVLISALRLV DVFSDDSNFR SSFINNTIPF LTQILASPHD EFVSSWCSVN MLVTEDDANL 420 EYDPFGAAEL ALLAASNMLT EAKANYLCPL RIINTAIPYA QRRTSCVVKI IANLHVFVPN 480 ICEEQERDLF LHKFQNYLLS ESPRPSLDNP ASDEASAVCR NLGSLSHYAK SLIPNKLLNE 540 DDVHLLSEFA CKLQTWCKSV AGLRTLQVAN SDTSSQIKED LQRVQQPLQT RANTMEESVP 600 TPYMNHEGNA RDETPRNRAS INCGLLQNSV GQNLIHLGVA RTTSTGYTGV STATSTELQH 660 GRSVDHFKTP EHIKGSGLQD DDERQRRRKK RTIMNDGQIN EIENALVGEP EMHRNATLLQ 720 AWAEKLSGQG SEITSSQLKN WLNNRKAKLA RIAKERVPSE GENADKPSTP ATSHFGDSSE 780 SAGEESYFPP PRVMNALGIS KGNGLLNPGT NDTTTQSEFN QNIMTTRPFT RSYSLEPGRP 840 VLLIDNEGNE IGRGEIFQVE GMAQGRSLTE SRICIIDITE LKIEKWRELP HPSEASGRTF 900 QEAESRHGGV MRVAWDVIRI APVVL*

Sequence ? help Back to Top

Protein Sequence Length: 926 aa Download sequence Send to blast

MPPSPPAPPS PRSRGLGVPV SEMIDMVSAI EELSGLTSRE LSEMLKESES FVLQCKAEDG  60
GPKQVDMEKL VSSLPRHLLA VCLELGSGSE LTYVLRGMRF LHSLSELATR HTRLEQVLDD  120
VKLSVQVVDL IFFVLSILSN SKKENHLGAS PFIHSSLVAA SLHLLTSYFP SQYNELVSIL  180
LAHPEVDIFM DLAFDSLHED MRLLSRRLST FGTDAFPVGP LESQLTHFIC QQCETSLQLL  240
LLLCQQKLFR DRILENKDLC RNGRILSLSL TILKLGVPEC LKGSAHIASS ISRLKAKVLS  300
IVVQLCEAEG ISYLDEVATL PKSMQLGQTF ALKVLDLLKT AFGRKEKSVA GSHDKSYPMG  360
SVLISALRLV DVFSDDSNFR SSFINNTIPF LTQILASPHD EFVSSWCSVN MLVTEDDANL  420
EYDPFGAAEL ALLAASNMLT EAKANYLCPL RIINTAIPYA QRRTSCVVKI IANLHVFVPN  480
ICEEQERDLF LHKFQNYLLS ESPRPSLDNP ASDEASAVCR NLGSLSHYAK SLIPNKLLNE  540
DDVHLLSEFA CKLQTWCKSV AGLRTLQVAN SDTSSQIKED LQRVQQPLQT RANTMEESVP  600
TPYMNHEGNA RDETPRNRAS INCGLLQNSV GQNLIHLGVA RTTSTGYTGV STATSTELQH  660
GRSVDHFKTP EHIKGSGLQD DDERQRRRKK RTIMNDGQIN EIENALVGEP EMHRNATLLQ  720
AWAEKLSGQG SEITSSQLKN WLNNRKAKLA RIAKERVPSE GENADKPSTP ATSHFGDSSE  780
SAGEESYFPP PRVMNALGIS KGNGLLNPGT NDTTTQSEFN QNIMTTRPFT RSYSLEPGRP  840
VLLIDNEGNE IGRGEIFQVE GMAQGRSLTE SRICIIDITE LKIEKWRELP HPSEASGRTF  900
QEAESRHGGV MRVAWDVIRI APVVL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	685	690	RRRKKR
2	685	691	RRRKKRT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g11517.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010237478.1	0.0	nodulin homeobox isoform X2
TrEMBL	A0A0Q3PE14	0.0	A0A0Q3PE14_BRADI; Uncharacterized protein
STRING	BRADI4G11517.1	0.0	(Brachypodium distachyon)

Link Out ? help Back to Top
Phytozome	Bradi4g11517.2.p
Entrez Gene	100839444