PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g11517.5.p
Common NameBRADI_4g11517, LOC100839444
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HB-other
Protein Properties Length: 887aa    MW: 98144.7 Da    PI: 6.0903
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g11517.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox14.46.8e-05649709154
                       TT--SS--HHHHHHHHHHHHHSSS-..-HHHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS
          Homeobox   1 rrkRttftkeqleeLeelFeknryp..saeereeLAkkl.....gLterqVkvWFqNrRak 54 
                       r+kRt +++ q++e e++   ++ +  +a+  +  A+kl     ++t +q k+W  Nr+ak
  Bradi4g11517.5.p 649 RKKRTIMNDGQINEIENALVGEPEMhrNATLLQAWAEKLsgqgsEITSSQLKNWLNNRKAK 709
                       89****************9986666114556899999999999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.6E-6631710IPR009057Homeodomain-like
PROSITE profilePS500719.961646713IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 887 aa     Download sequence    Send to blast
MPPSPPAPPS PRSRGLGVPV SEMIDMVSAI EELSGLTSRE LSEMLKESES FVLQCKAEDG  60
GPKQVDMEKL VSSLPRHLLA VCLELGSGSE LTYVLRGMRF LHSLSELATR HTRLEQVLDD  120
VKLSVQVVDL IFFVLSILSN SKKVDIFMDL AFDSLHEDMR LLSRRLSTFG TDAFPVGPLE  180
SQLTHFICQQ CETSLQLLLL LCQQKLFRDR ILENKDLCRN GRILSLSLTI LKLGVPECLK  240
GSAHIASSIS RLKAKVLSIV VQLCEAEGIS YLDEVATLPK SMQLGQTFAL KVLDLLKTAF  300
GRKEKSVAGS HDKSYPMGSV LISALRLVDV FSDDSNFRSS FINNTIPFLT QILASPHDEF  360
VSSWCSVNML VTEDDANLEY DPFGAAELAL LAASNMLTEA KANYLCPLRI INTAIPYAQR  420
RTSCVVKIIA NLHVFVPNIC EEQERDLFLH KFQNYLLSES PRPSLDNPAS DEASAVCRNL  480
GSLSHYAKSL IPNKLLNEDD VHLLSEFACK LQTWCKSVAG LRTLQVANSD TSSQIKEDLQ  540
RVQQPLQTRA NDVQTMEESV PTPYMNHEGN ARDETPRNRA SINCGLLQNS VGQNLIHLGV  600
ARTTSTGYTG VSTATSTELQ HGRSVDHFKT PEHIKGSGLQ DDDERQRRRK KRTIMNDGQI  660
NEIENALVGE PEMHRNATLL QAWAEKLSGQ GSEITSSQLK NWLNNRKAKL ARIAKERVPS  720
EGENADKPST PATSHFGDSS ESAGEESYFP PPRVMNALGI SKGNGLLNPG TNDTTTQSEF  780
NQNIMTTRPF TRSYSLEPGR PVLLIDNEGN EIGRGEIFQV EGMAQGRSLT ESRICIIDIT  840
ELKIEKWREL PHPSEASGRT FQEAESRHGG VMRVAWDVIR IAPVVL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1646651RRRKKR
2646652RRRKKRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g11517.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010237477.10.0nodulin homeobox isoform X1
TrEMBLA0A2K2CM560.0A0A2K2CM56_BRADI; Uncharacterized protein
STRINGBRADI4G11517.10.0(Brachypodium distachyon)