PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g13562.1.p
Common NameBRADI_4g13562
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 107aa    MW: 11665.5 Da    PI: 5.1052
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g13562.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM47.17.9e-151395194
               NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94
                      lp GfrF Ptdeel v+yL kk+ + +l+  ++i+ +d+  ++P dLp+   +++ + +fF ++ + ++          +g+Wk++ kd+ v++
  Bradi4g13562.1.p 13 LPIGFRFPPTDEELAVYYLPKKALSFPLPW-DIIPVADLALIDPTDLPSD--ETHGDKFFFRRSLEVES--------GGAGVWKTSRKDELVVV 95
                      699***************************.99***************32..33346677776655443........35688888888877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-20995IPR003441NAC domain
PROSITE profilePS5100518.69613106IPR003441NAC domain
PfamPF023651.8E-81491IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MATAVSGGRV LGLPIGFRFP PTDEELAVYY LPKKALSFPL PWDIIPVADL ALIDPTDLPS  60
DETHGDKFFF RRSLEVESGG AGVWKTSRKD ELVVVLPQRV PMARNA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g13562.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024310836.19e-31NAC domain-containing protein 83-like
TrEMBLA0A0Q3INE83e-70A0A0Q3INE8_BRADI; Uncharacterized protein
STRINGBRADI4G13560.11e-45(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2278446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14000.11e-17NAC domain containing protein 84