PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g13575.1.p
Common NameBRADI_4g13575
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 139aa    MW: 15599 Da    PI: 7.4207
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g13575.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM22.72.7e-07367488128
               NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++ v+++ ++  v lk+ L+f+   + +g +t+Wvmheyrl
  Bradi4g13575.1.p  36 TEELVVVSpRRVPVALKQPLIFF---SADGARTRWVMHEYRL 74 
                       4444444438889**********...678899********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100512.4491100IPR003441NAC domain
SuperFamilySSF1019413.01E-136100IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MAMPEAGREG LGLPIGFWFM PNDEELTVYL RKKPGTEELV VVSPRRVPVA LKQPLIFFSA  60
DGARTRWVMH EYRLHPALLA RAASIGKDVE NRVVCRVFWK ATRRDGNLQD MRRPLSPASS  120
CVTEELGDDD EEKMATSN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g13575.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024310836.18e-45NAC domain-containing protein 83-like
TrEMBLA0A0Q3H3021e-97A0A0Q3H302_BRADI; Uncharacterized protein
STRINGBRADI1G48580.12e-33(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82333047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.36e-09NAC family protein