PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g14190.1.p

Common Name

BRADI_4g14190, LOC100838932

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bHLH

Protein Properties

Length: 273aa MW: 29846.1 Da PI: 9.9479

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g14190.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.3	7.3e-05	38	81	2	49
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAve 49 + + erE+ Rd++N+ f eL ++l + + Ka++L A + Bradi4g14190.1.p 38 KNHKAEREKLKRDQLNDLFVELSSMLDLD----RQNSGKATVLGDAAR 81 677899*******************9885....344445555555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.88E-10	34	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-7	34	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.569	36	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0034	42	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MVADTESSDS PSGSSNSAAE KRVDGFLDRR SQEKAPKKNH KAEREKLKRD QLNDLFVELS 60 SMLDLDRQNS GKATVLGDAA RVLRDLLTQV ESLRKEQSAL LTERQYVGSE KNELQDENTT 120 LKAQIMQLQD ELRARMGNNS LNLSSLGMSH PVASNSTNLA THPRPRHTWS NASNLSTLPM 180 AHPMNTPSLL QNQHPHSVGS GEVASRPQEL QLFPGTSASL DRERSRHRSN PATSSSLADS 240 MPGQLRLSLP RASQGESSSS GVSGNRKERK NC*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g14190.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010237571.1	0.0	transcription factor BHLH062
TrEMBL	I1IKJ8	0.0	I1IKJ8_BRADI; Uncharacterized protein
STRING	BRADI4G14190.2	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12959	21	24
Representative plant	OGRP14679	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	2e-33	bHLH family protein

Link Out ? help Back to Top
Phytozome	Bradi4g14190.1.p
Entrez Gene	100838932