PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g16463.1.p
Common NameBRADI_4g16463
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARR-B
Protein Properties Length: 571aa    MW: 62968.6 Da    PI: 6.3791
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g16463.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like73.33.5e-23149200153
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 
                       kpr+rWt+eLH  F++av+qL G++kA+Pk+il++m+v+ L +e+++SHLQ Y
  Bradi4g16463.1.p 149 KPRVRWTKELHGIFLKAVNQL-GIDKAVPKKILDMMDVDYLNRENIASHLQVY 200
                       79*******************.*****************************99 PP
2Response_reg55.72.8e-1938330109
                       SSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
      Response_reg  30 ddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                       +d+  al++l+e +  +Dl++ D+ mp+mdG+ell++i  e  +lp+i+++a++e e++ + +  Ga d+l+Kp   +el +
  Bradi4g16463.1.p   3 RDPVMALQMLREGKdqFDLVISDVHMPDMDGFELLEHIGLEM-DLPVIMLSANEEIETVMKGITNGACDYLVKPLCAKELKN 83 
                       6777899999887778**********************6654.8******************************99888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011033.145189IPR001789Signal transduction response regulator, receiver domain
SMARTSM004484.2E-4185IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.6E-16383IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521729.11E-25397IPR011006CheY-like superfamily
CDDcd001566.12E-21488No hitNo description
Gene3DG3DSA:3.40.50.23007.1E-285102No hitNo description
PROSITE profilePS5129412.328146205IPR017930Myb domain
SuperFamilySSF466892.33E-17147205IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.6E-24147209IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-23149203IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MTRDPVMALQ MLREGKDQFD LVISDVHMPD MDGFELLEHI GLEMDLPVIM LSANEEIETV  60
MKGITNGACD YLVKPLCAKE LKNIWQHIVR RRNPHLRNDR SSINSGKNYY ADEKQGPAKD  120
IRKCPGMIKY HGDVSHEIKE NVVLSAQTKP RVRWTKELHG IFLKAVNQLG IDKAVPKKIL  180
DMMDVDYLNR ENIASHLQVY FIHLKYRLYL KKVKTKVENN TIMNSNPSAD ASTRLSSSFN  240
AMKEPESFQY YHGHGQYQPS RNNFSTRIDS HSPSSFGADN VMPTQSKQRD DLGMGQIDNG  300
GSMFLKDVTS ASSPLPDARQ HTSSSNSYAN MPADAFSSFR SCGISYSNIL CGKPLEASIG  360
NDTGNYFARI PYGGLLVHAN QLPVQPSPQL RHGHSSQKNP CGDDNRDIGN FWQDAKLSDH  420
GNTDGRESQA NILNINHVTS LATASAGSMC QNKLQNQMGA ILSTSEQNVS FNVASNDTSS  480
IQLLNESSTL GITSGIGSYT LPNLQMVSYV TSTHMLNGGS EGGILSMQEQ GSVDPEAVND  540
QPNYNNGPLI GTNELDGSCS WDDILVLNEK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-21145213163ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g16463.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010237652.20.0uncharacterized protein LOC100826162
TrEMBLA0A0Q3EKV80.0A0A0Q3EKV8_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5029722
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.13e-61response regulator 12