PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g16840.1.p

Common Name

BRADI_4g16840, LOC100823511

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NF-YC

Protein Properties

Length: 256aa MW: 27925.1 Da PI: 5.2573

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g16840.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	64.7	1.8e-20	7	86	19	98
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 +++P arikki++adedv +i+ +Pvl+s+a elf+ +l rs++ + ++ +tl+ ++++v+r + fdfl++iv + Bradi4g16840.1.p 7 TRFPAARIKKIMQADEDVGKIALAVPVLVSRALELFLQDLIDRSYNITVQSGAKTLNSFHLKQCVKRYNSFDFLTEIVNK 86 579*************************************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	3.62E-21	3	106	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	5.7E-26	3	72	IPR009072	Histone-fold
Pfam	PF00808	2.3E-18	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MRKKLGTRFP AARIKKIMQA DEDVGKIALA VPVLVSRALE LFLQDLIDRS YNITVQSGAK 60 TLNSFHLKQC VKRYNSFDFL TEIVNKVPDL GGADSCGDER GLPRRRKLSN ESDPENEEPR 120 SSKMPIRSLN TSPRGRGRGR GRGRGRPPTK RKEVGYVQFE DESSMFTEQS ESLPGDDAIP 180 ETKCGSESIP QSANPPADAP STGVPAAISK VEEASTNHQP DWPMPDAIGG IGVGPSSFGH 240 LTVQVDEDED YDNED*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	4e-23	2	71	5	74	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	102	106	PRRRK
2	135	144	RGRGRGRGRG
3	135	145	RGRGRGRGRGR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g16840.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM078730	0.0	KM078730.1 Triticum aestivum CCAAT-binding transcription factor C (NFYC-B6) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003577492.1	0.0	dr1-associated corepressor
TrEMBL	I1ILA7	0.0	I1ILA7_BRADI; Uncharacterized protein
STRING	BRADI4G16840.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2172	36	79
Representative plant	OGRP2179	16	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	2e-52	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	Bradi4g16840.1.p
Entrez Gene	100823511