PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g17410.5.p
Common NameBRADI_4g17410, LOC100823699
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 676aa    MW: 75081.4 Da    PI: 8.8053
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g17410.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.51.2e-187713399
                      -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                      +++lt +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F   + +++el+v+v+r+
  Bradi4g17410.5.p  7 TQELTAKDLHGAEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFL--RGENGELRVGVRRA 71
                      3589***********************************************..449999*****996 PP
2Auxin_resp115.25.9e-3896178183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       a+ha++t+++F+v+Y+Pr+s++eFvv++++++++lk+++s+GmRfkm+fe+e+++e+r++Gt+vg+ d+dp  W +SkWrsLk
  Bradi4g17410.5.p  96 AWHAVNTGTMFTVYYKPRTSPAEFVVPYDRYMESLKRNYSIGMRFKMRFEGEEAPEQRFTGTIVGMGDSDPAGWAESKWRSLK 178
                       89*******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.0E-4172IPR003340B3 DNA binding domain
PROSITE profilePS5086312.534172IPR003340B3 DNA binding domain
SuperFamilySSF1019366.47E-23299IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.6E-27285IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-14570No hitNo description
PfamPF023622.8E-16771IPR003340B3 DNA binding domain
PfamPF065072.8E-3596178IPR010525Auxin response factor
PROSITE profilePS5174521.254547631IPR000270PB1 domain
SuperFamilySSF542771.91E-10551623No hitNo description
PfamPF023097.0E-8591637IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MSRQPPTQEL TAKDLHGAEW RFRHIFRGQP RRHLLQSGWS VFVSAKRLVA GDAFIFLRGE  60
NGELRVGVRR AMRQQTNVPS SVISSHSMHL GVLATAWHAV NTGTMFTVYY KPRTSPAEFV  120
VPYDRYMESL KRNYSIGMRF KMRFEGEEAP EQRFTGTIVG MGDSDPAGWA ESKWRSLKVR  180
WDEASSIPRP ERVSPWQIEP AVSPPPINPL PVPRTKRPRP NVIASTTDSS TQAKEVAPKV  240
AAETQQHALQ RAFQTQENAT PKTGFGDGSE LDTTQKSVLQ PSGFEREKNN IPTQIKLGSN  300
GWMQMSRPES YSEMLSGFQP PKDVQNQQGF RSFPEQIAAG HSNFWHTVNA HYQDQQGSHS  360
TFPGSWSLMP QNTGFGLNKQ NYPMMQEVAG LPQRAANTKF GNGGYAALPG RGFDQYSTGW  420
FGHMMPSSHM DDTQPRVIKP QPLVVGHGDM QKTKGASCKL FGIHLDSPAK SEPLKSPPSV  480
AYDGMPHTPG SAELCRMDAT EPEKCYDPSK TPKPLDAPYA DSVPEKHLSC QQASRNASGK  540
SRGGSARSCK KVHKQGIALG RSVDLTKFNG YMELVSELDD MFDFNGDLKS SNKEWMVVYT  600
DHEGDMMLVG DDPWSEFCNI VHKIFIYTRE EVQRMAPGAL NSRSEESPAN SMERGSAARE  660
VRGCLSASSL NSENC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1021200155354Auxin response factor 1
4ldw_A1e-1021200155354Auxin response factor 1
4ldw_B1e-1021200155354Auxin response factor 1
4ldx_A1e-1021200155354Auxin response factor 1
4ldx_B1e-1021200155354Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215219KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g17410.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010237690.10.0auxin response factor 23 isoform X1
RefseqXP_010237691.10.0auxin response factor 23 isoform X1
SwissprotA2ZET60.0ARFW_ORYSI; Auxin response factor 23
TrEMBLI1ILH10.0I1ILH1_BRADI; Auxin response factor
STRINGBRADI4G17410.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2