PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g17441.1.p

Common Name

BRADI_4g17441

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 249aa MW: 29264.5 Da PI: 9.4221

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g17441.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.3	3e-19	54	145	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 Y +YA+ F vr+++++ ++ge+ +++fvC+k gk+++ k++ + +r+++ ++rtgC+a++kvk++ +++ ++++e+eHnH+ Bradi4g17441.1.p 54 HYVDYARWNRFGVRVDYQRPI-KSGETSRAQFVCYKAGKNKKGKEDtqrpesVVPKRKRNITERTGCQARMKVKLD-GATYIMEHFEEEHNHH 144 69************99887.7888************9999999998889999**************.9************8 PP FAR1 89 l 89 + Bradi4g17441.1.p 145 V 145 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-15	54	146	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MCMPIFIYID NMNSAVPDTV ESNEDDDDGD DGISAPKKPA VGMRFDNIEA AKQHYVDYAR 60 WNRFGVRVDY QRPIKSGETS RAQFVCYKAG KNKKGKEDTQ RPESVVPKRK RNITERTGCQ 120 ARMKVKLDGA TYIMEHFEEE HNHHVLKKFN LARYLRSHRH MPREEKEFVK LLHGCNLRTS 180 QMMHILSTLH GKLEDLSYRR TDMANFRVAL RREHCVMDLK FTLQYFNKLK KEDDDFFYSF 240 ELAMKIGR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g17441.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024312803.1	1e-122	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2K2CNI2	0.0	A0A2K2CNI2_BRADI; Uncharacterized protein
STRING	BRADI1G35320.1	1e-116	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9528	8	43
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-17	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Bradi4g17441.1.p