PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g21230.1.p

Common Name

BRADI_4g21230

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 215aa MW: 24359.9 Da PI: 10.311

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g21230.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	52.2	2e-16	88	186	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..............tekerrtraetrtgCkaklkvkkekdgkwevtk 80 Yn+YA+ Fs++ ++s+k k+ + + sk k+e+++++ +k+rr+++ ++t+Ckak++vk++ dg+wev+ Bradi4g21230.1.p 88 HYNAYARVKCFSIKANTSRKPKNMDDAAG---QSSKVRKKESSSDDepvdanegplasqkVVKRRRRESIKETECKAKMTVKLK-DGRWEVIF 176 6**************999966664443...33444444444444455799**988899999999**********.**** PP FAR1 81 leleHnHela 90 ++ eHnHel Bradi4g21230.1.p 177 FVVEHNHELI 186 ******96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.9E-14	88	186	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MKIRKKKGRK STKKRAGLQY RGGSWKENHV SYAPFVWADE KVVIMQRLNV KPWDLNLEAP 60 LDDGIGGGAE PEPFLGMRFD TLAGAKEHYN AYARVKCFSI KANTSRKPKN MDDAAGQSSK 120 VRKKESSSDD EPVDANEGPL ASQKVVKRRR RESIKETECK AKMTVKLKDG RWEVIFFVVE 180 HNHELITKPS LTKYLLSHKN ISPEEEDFLR ATAI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g21230.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024312602.1	1e-61	protein FAR1-RELATED SEQUENCE 5
TrEMBL	I1IMA1	1e-157	I1IMA1_BRADI; Uncharacterized protein
STRING	BRADI4G21230.1	1e-158	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9528	8	43
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	7e-11	far-red elongated hypocotyls 3

Link Out ? help Back to Top
Phytozome	Bradi4g21230.1.p