PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g22195.1.p
Common NameBRADI_4g22195
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 180aa    MW: 19547.6 Da    PI: 9.515
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g22195.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM47.36.5e-1513101195
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lp+GfrF Ptdeel v yL+kk+ + +l+  ++i+ +d+ +++P  Lp     +++    Fs+   +  +  r     ++g+Wka+gk++ v 
  Bradi4g22195.1.p  13 LPAGFRFMPTDEELTVSYLHKKALSFPLPS-HIIPIADLAHIHPAYLP-----GTRGQVLFSQPVPRCGRRARGMPPGAAGVWKASGKEELVR 99 
                       799*************************99.88***************.....567788999998888777777777789********99988 PP

               NAM  94 sk 95 
                       ++
  Bradi4g22195.1.p 100 HN 101
                       74 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-248136IPR003441NAC domain
PROSITE profilePS5100516.98613162IPR003441NAC domain
PfamPF023651.4E-814110IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MAIPEAHGGM LGLPAGFRFM PTDEELTVSY LHKKALSFPL PSHIIPIADL AHIHPAYLPG  60
TRGQVLFSQP VPRCGRRARG MPPGAAGVWK ASGKEELVRH NHWDMQEYRL HPAMLAAAAK  120
VGKAVEDWVV CYVFKKATRR GRNPADIGGP SSPASSCVTK ELGDNEEEKM ASSDKPRIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-151113815167NO APICAL MERISTEM PROTEIN
1ut4_B7e-151113815167NO APICAL MERISTEM PROTEIN
1ut7_A7e-151113815167NO APICAL MERISTEM PROTEIN
1ut7_B7e-151113815167NO APICAL MERISTEM PROTEIN
3swm_A7e-151113818170NAC domain-containing protein 19
3swm_B7e-151113818170NAC domain-containing protein 19
3swm_C7e-151113818170NAC domain-containing protein 19
3swm_D7e-151113818170NAC domain-containing protein 19
3swp_A7e-151113818170NAC domain-containing protein 19
3swp_B7e-151113818170NAC domain-containing protein 19
3swp_C7e-151113818170NAC domain-containing protein 19
3swp_D7e-151113818170NAC domain-containing protein 19
4dul_A7e-151113815167NAC domain-containing protein 19
4dul_B7e-151113815167NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g22195.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024310836.17e-66NAC domain-containing protein 83-like
TrEMBLA0A0Q3L8Q51e-129A0A0Q3L8Q5_BRADI; Uncharacterized protein
STRINGBRADI1G48580.14e-50(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82333047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-17NAC domain containing protein 83