PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g22216.2.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 173aa    MW: 18970.6 Da    PI: 6.6785
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g22216.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM37.66.5e-121381163
               NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.....kvkaeekew.yfFsk 63
                      lp GfrF Ptdeel   yL+kk+ + + +  e+i+ +d+ + +P ++p +     +++ e++ + +fFs+
  Bradi4g22216.2.p 13 LPTGFRFMPTDEELTASYLRKKALSFPAPS-EIIPIADLARPHPPSIPpAydkmiQFRDETHGVkFFFSR 81
                      799************************999.89**************95466644333344444477776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-218134IPR003441NAC domain
PROSITE profilePS5100510.95413172IPR003441NAC domain
PfamPF023651.2E-914108IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MAMPEARGGG LGLPTGFRFM PTDEELTASY LRKKALSFPA PSEIIPIADL ARPHPPSIPP  60
AYDKMIQFRD ETHGVKFFFS RSTLVFFTVN VGSGATRRTQ WIMHEYRLHP ALLAVVAKVG  120
KDVEDSVVCR FFKKATRRGG NPEDMGGPSS PHLSCVTEEL GDDEEEMASS NN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g22216.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239224.17e-82NAC domain-containing protein 76
TrEMBLA0A2K2CPH91e-124A0A2K2CPH9_BRADI; Uncharacterized protein
STRINGBRADI4G22210.17e-59(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82333047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-17NAC domain containing protein 83