PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g23270.2.p
Common NameBRADI_4g23270, LOC100822154
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 475aa    MW: 52310.5 Da    PI: 9.2903
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g23270.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.26e-132603698
                      EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                      ++l+ +sg+ W  +l      ++ ++++GWkeFv+++ +++g f++F++dgrs+f   v vf+
  Bradi4g23270.2.p  2 VSLKGQSGNIWLAEL--AVDTEGLFFANGWKEFVRDHSIETGHFLTFRYDGRSKF--SVVVFD 60
                      78999**********..999999****************************9999..666665 PP
2B345.71.1e-14369459498
                       E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                       +++ s+v     + lp  f++++   ++ +k+l+l d++g+sW+v++ y   +    +++GW++F   n+L+  D++vF+l+++++   +v++
  Bradi4g23270.2.p 369 IMKESYVYVGFFMNLPCGFVRDCL--PRANKKLKLWDPQGKSWDVNYVYYSARAVGAFSGGWSKFSLGNNLEKFDICVFELISKDDI--KVHI 457
                       6788999999999*********95..345679***************887777777899**********************986655..7777 PP

                       E- CS
                B3  97 fr 98 
                       +r
  Bradi4g23270.2.p 458 YR 459
                       66 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100174.00E-12160No hitNo description
PROSITE profilePS5086314.339162IPR003340B3 DNA binding domain
SMARTSM010190.35162IPR003340B3 DNA binding domain
PfamPF023621.5E-10260IPR003340B3 DNA binding domain
SuperFamilySSF1019369.81E-14266IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-13262IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-23358459IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-22359459IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.464366461IPR003340B3 DNA binding domain
SMARTSM010194.0E-13366461IPR003340B3 DNA binding domain
PfamPF023621.6E-12368459IPR003340B3 DNA binding domain
CDDcd100179.48E-21368459No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0034613Biological Processcellular protein localization
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MVSLKGQSGN IWLAELAVDT EGLFFANGWK EFVRDHSIET GHFLTFRYDG RSKFSVVVFD  60
GKCIEKPSAF HARPCKDLIV KLENGEGDMG MNATDPSQIL VSPLGGSNEN TRERVSEMDA  120
NGTILQRCSS VLEKGKKISP GVLVGTNKTA STSLNKDMSV SDQSESVPNE ESIGTTRKRI  180
REMDANGSTS EKCSKVSEMV MKKGPEASVV NNEASTSLNM DMNAAGPAES LLATPEDSNG  240
TTRKRVKEIN VNDSTFKKCS SASVKGKEKC PVASVGTYKS TTTSRNSTEE SDSESSMLEQ  300
SISSIKAEIS SPMRLRKNKD VPKCGKYIAT GQRQLLVISQ RPPVTEEQKN HALQRAKKFK  360
SKNPFALQIM KESYVYVGFF MNLPCGFVRD CLPRANKKLK LWDPQGKSWD VNYVYYSARA  420
VGAFSGGWSK FSLGNNLEKF DICVFELISK DDIKVHIYRV VPEITPFLPG TNRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1733946022142B3 domain-containing transcription factor VRN1
4i1k_B2e-1733946022142B3 domain-containing transcription factor VRN1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00192DAPTransfer from AT1G49480Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g23270.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576206.10.0B3 domain-containing protein Os11g0197600 isoform X1
SwissprotQ2R9D21e-86Y1176_ORYSJ; B3 domain-containing protein Os11g0197600
TrEMBLI1IMS60.0I1IMS6_BRADI; Uncharacterized protein
STRINGBRADI4G23270.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.11e-17related to vernalization1 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]