PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g23270.5.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 428aa    MW: 47337.9 Da    PI: 6.7761
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g23270.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3505.6e-1680168298
                       EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       f v++p  +++  rl++p +f  ++  +++++  +++l+ +sg+ W  +l      ++ ++++GWkeFv+++ +++g f++F++dgrs+f   
  Bradi4g23270.5.p  80 FRVFLPQQYGE--RLRIPLSFN-QYlRNQPAG--MVSLKGQSGNIWLAEL--AVDTEGLFFANGWKEFVRDHSIETGHFLTFRYDGRSKF--S 163
                       55665555554..69******8.664666666..8***************..999999****************************9999..6 PP

                       EEEE- CS
                B3  94 vkvfr 98 
                       v vf+
  Bradi4g23270.5.p 164 VVVFD 168
                       66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.60677170IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-1977170IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-1978170IPR015300DNA-binding pseudobarrel domain
CDDcd100173.02E-1779168No hitNo description
SMARTSM010192.6E-1479170IPR003340B3 DNA binding domain
PfamPF023622.4E-1481168IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0034613Biological Processcellular protein localization
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MARRQEQGSR RREQQERERR RREELEREES TAAGEKEKEK EKEKEESTVA AAMVATEKEN  60
GEDKEKEKEG EEEKFGQQFF RVFLPQQYGE RLRIPLSFNQ YLRNQPAGMV SLKGQSGNIW  120
LAELAVDTEG LFFANGWKEF VRDHSIETGH FLTFRYDGRS KFSVVVFDGK CIEKPSAFHA  180
RPCKDLIVKL ENGEGDMGMN ATDPSQILVS PLGGSNENTR ERVSEMDANG TILQRCSSVL  240
EKGKKISPGV LVGTNKTAST SLNKDMSVSD QSESVPNEES IGTTRKRIRE MDANGSTSEK  300
CSKVSEMVMK KGPEASVVNN EASTSLNMDM NAAGPAESLL ATPEDSNGTT RKRVKEINVN  360
DSTFKKCSSA SVKGKEKCPV ASVGTYKSTT TSRNSTEEST MWICQGLSSP SQQEVKTLGS  420
TRKVLGC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11722ERRRRE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00192DAPTransfer from AT1G49480Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g23270.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576206.10.0B3 domain-containing protein Os11g0197600 isoform X1
RefseqXP_010237857.10.0B3 domain-containing protein Os11g0197600 isoform X2
TrEMBLA0A2K2CPP10.0A0A2K2CPP1_BRADI; Uncharacterized protein
STRINGBRADI4G23270.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60130.22e-17B3 family protein