PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g24750.4.p
Common NameBRADI_4g24750, LOC100846758
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 395aa    MW: 44879.6 Da    PI: 7.227
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g24750.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix71.51.6e-2283179186
          trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyf 82 
                       +W  ++v++Li+a++++ e+ + +           +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ + + +++++ + +++
  Bradi4g24750.4.p  83 KWAGSMVKLLITAVSYTAEDPGPDLncgkrsgtiaQKKGKWKAISKVMCERGCNVSPQQCEDKFNDLNKRYKRLTDILGCGiACDVVGNPALL 175
                       7**************88888886522344555566*****************************************99988678887777777 PP

          trihelix  83 dqle 86 
                       d ++
  Bradi4g24750.4.p 176 DGMD 179
                       7776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.5E-1781205No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MEGSSLPPGN PMQVTPYGSF AMPVNRIQDP DRLPRFQFGE HGKVDHHQHS HRSKNCLSDE  60
EEHDMTEDVG GKGKNGSAWH RVKWAGSMVK LLITAVSYTA EDPGPDLNCG KRSGTIAQKK  120
GKWKAISKVM CERGCNVSPQ QCEDKFNDLN KRYKRLTDIL GCGIACDVVG NPALLDGMDN  180
LSDKMKEDAR KILSSKHLFY EEMCSYHNNN RVSLPEDLEF QHSLQLALRC KEDRGPRKDT  240
SGEDQSADSD YEENDEWHQA VRTNMNKRMC HTVDHVDVGF VPSSSNNGSG RFDPHGITLD  300
INKGLPDGTN LPSLQKDLAS QALELQERRL QIEVNELAIT KRRLKWERFK KQTEREMKRM  360
ELENERMMIM NKRSQLLLRH KELELMAKGD PNHA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g24750.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577819.10.0uncharacterized protein LOC100846758
TrEMBLA0A2K2CQ340.0A0A2K2CQ34_BRADI; Uncharacterized protein
STRINGBRADI4G24750.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.15e-88sequence-specific DNA binding transcription factors