PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g25170.1.p
Common NameBRADI_4g25170, LOC100824846
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 278aa    MW: 31133.6 Da    PI: 7.4284
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g25170.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3941.1e-2938141198
                       EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.. CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.. 87 
                       f+k+ltpsdv+k++rlv+pk++ae++    g + e++  l++ de g+ W+++++y+ +s++yvltkGW+++vk+++L++gD+v F++++   
  Bradi4g25170.1.p  38 FEKALTPSDVGKLNRLVIPKQHAERCfplgGDSGEKGLLLSFDDEAGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKQLDAGDVVHFERVRGlg 130
                       99***************************9555668889************************************************886554 PP

                       SEE..EEEEE- CS
                B3  88 sefelvvkvfr 98 
                       ++ +l+++ +r
  Bradi4g25170.1.p 131 TGDRLFIGCRR 141
                       55556666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-3933144IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-2735129IPR015300DNA-binding pseudobarrel domain
CDDcd100175.66E-2636128No hitNo description
PfamPF023626.6E-2738142IPR003340B3 DNA binding domain
SMARTSM010193.6E-2138142IPR003340B3 DNA binding domain
PROSITE profilePS5086313.73338142IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MAMNPLSQEH HPNAWPWGVA MYTNLHYQQY HYEKEHLFEK ALTPSDVGKL NRLVIPKQHA  60
ERCFPLGGDS GEKGLLLSFD DEAGKPWRFR YSYWTSSQSY VLTKGWSRYV KEKQLDAGDV  120
VHFERVRGLG TGDRLFIGCR RRGDVGAPTP PPAVRVMPAS GQNHPREQHQ QQPWSPMCYS  180
TSGSYPTSPA NSQAYRRSVD HDHSDMHHAG ESQWDADGRT CSPASAPTRR LRLFGVNLDC  240
GPEPEADTST ATEAMYGYMH QIPYAAVSPV PSNWGSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-51331463117B3 domain-containing transcription factor NGA1
5os9_B4e-51331463117B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g25170.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3752770.0AK375277.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3089K07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577828.10.0B3 domain-containing protein Os11g0156000
SwissprotQ53QI01e-129Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBLI1INF20.0I1INF2_BRADI; Uncharacterized protein
STRINGBRADI4G25170.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24463889
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.27e-56B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]