PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g25717.1.p
Common NameBRADI_4g25717, LOC100822988
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 240aa    MW: 25665.2 Da    PI: 8.4576
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g25717.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.62.2e-2251112259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                       dDg++WrKYG K+  +s+fpr YYrCt++   +Cp++k+v+++ ++dp ++ +tY ++H+++
  Bradi4g25717.1.p  51 DDGHQWRKYGEKKLSNSNFPRFYYRCTYKndmKCPATKQVQQKdTSDPPLFSVTYFNHHTCN 112
                       8***************************99999*******876157**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-2339113IPR003657WRKY domain
SuperFamilySSF1182901.57E-2243113IPR003657WRKY domain
PROSITE profilePS5081116.15745114IPR003657WRKY domain
SMARTSM007741.5E-3350113IPR003657WRKY domain
PfamPF031065.7E-2551111IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MALDSVPAYP GDLGSSTTRA SGSGGGGGGR TQHRIRKEER TWTADTYAPY DDGHQWRKYG  60
EKKLSNSNFP RFYYRCTYKN DMKCPATKQV QQKDTSDPPL FSVTYFNHHT CNTTSRPIGS  120
APDTMEQPSS RKAVSICFGS SAATEQLPAF LTPPSTAALH SPASRGNDPQ DRGTYAPQFQ  180
WADASSSLST GNAPVKMEAD DHAGGAGSSS SSITGGGGAL SRTLLPIGQS RCIEYFQFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-1651111968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g25717.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6654261e-118EU665426.1 Triticum aestivum WRKY13 transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010237946.11e-178WRKY transcription factor 55 isoform X1
TrEMBLI1INJ41e-177I1INJ4_BRADI; Uncharacterized protein
STRINGBRADI4G25717.11e-178(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP203235100
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.12e-20WRKY DNA-binding protein 46