PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g26520.4.p
Common NameBRADI_4g26520, LOC100835567
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 371aa    MW: 42593.7 Da    PI: 6.7968
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g26520.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS219.91.3e-6756367110374
              GRAS 110 ervHiiDfdis..qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL....rv 196
                       e v iiD++ s  +  QW+ +l+ +  Rp+gpp+lR+T+v++    ++e l  ++  L+k A +l  +f+f+  v+ rle+l++++L    ++
  Bradi4g26520.4.p  56 EVVRIIDLSGSttHQWQWLKILHDFHGRPGGPPELRLTVVHE----DSEFLDYMQTLLSKQAGTLMPSFHFDK-VVGRLEALDFSNLreilKI 143
                       56789***8651155678999*********************....99*************************.7999****99998443355 PP

              GRAS 197 kpgEalaVnlvlqlhrll............................................desvsleserdevLklvkslsPkvvvvveqe 245
                       + gEa++++++lq+hrll                                            + + ++++   ++L++v+ l+P++vv++eqe
  Bradi4g26520.4.p 144 NFGEAVVISCALQMHRLLavdddddasrdgiaqlqqmankahlkqmmmassprstlsypqtpSPQRQIPKLLVSFLSAVRALKPNIVVMMEQE 236
                       55*********************************************************988666677778889******************* PP

              GRAS 246 adhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337
                       adhn++ F erf+e l+yy+alfdsl +a ++re++er+ vEr+ll++ei+n++ cega+r erhe+l++W++ ++++ F++vpls +a  + 
  Bradi4g26520.4.p 237 ADHNAPLFRERFAEMLRYYAALFDSLnAAAAGREDDERARVERVLLREEIKNMLVCEGAQRHERHEKLSQWEMHMNRCEFQSVPLSFDAIREG 329
                       **************************989999999********************************************************** PP

              GRAS 338 klllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       k  +   + ++   +ee+++ l+l W +  L+svSaWr
  Bradi4g26520.4.p 330 KEKMMSSGlKECRGIEEDKHRLLLSWGETHLYSVSAWR 367
                       99999999888899***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.3781346IPR005202Transcription factor GRAS
PfamPF035144.4E-6556367IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MSIPYMRPGS HPQSRFMWAT TPSVHCNRAD ATTNLRDRLR ITISDLTDIY VDFFDEVVRI  60
IDLSGSTTHQ WQWLKILHDF HGRPGGPPEL RLTVVHEDSE FLDYMQTLLS KQAGTLMPSF  120
HFDKVVGRLE ALDFSNLREI LKINFGEAVV ISCALQMHRL LAVDDDDDAS RDGIAQLQQM  180
ANKAHLKQMM MASSPRSTLS YPQTPSPQRQ IPKLLVSFLS AVRALKPNIV VMMEQEADHN  240
APLFRERFAE MLRYYAALFD SLNAAAAGRE DDERARVERV LLREEIKNML VCEGAQRHER  300
HEKLSQWEMH MNRCEFQSVP LSFDAIREGK EKMMSSGLKE CRGIEEDKHR LLLSWGETHL  360
YSVSAWRPRG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-2155369126380Protein SCARECROW
5b3h_D3e-2155369126380Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g26520.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014757751.10.0scarecrow-like protein 3 isoform X4
TrEMBLA0A0Q3IU630.0A0A0Q3IU63_BRADI; Uncharacterized protein
STRINGBRADI4G26520.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.17e-41scarecrow-like 3