PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g26600.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 524aa    MW: 59353 Da    PI: 4.7519
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g26600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM85.21.3e-26591892128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgk.rknratk.....sgyWkatg 87 
                       ppGfrF+Ptd el+  +L++k++g+kl+le ++ +v i+++eP++L  ++ + + ++wyfF+kr+   ++++  ++r+ +     s+ Wk++g
  Bradi4g26600.1.p  59 PPGFRFEPTDMELLEVFLRRKIDGRKLPLEVIFFDVPILNWEPHKLVeARKAYGVDRWYFFTKREPCLTNKEgDPRRKLNdvvgvSAGWKSSG 151
                       9****************************77799************7344445788*********98887552555553334344667***** PP

               NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       k++e ++  +g+lvg++k Lv+y g + +    +W+mhey l
  Bradi4g26600.1.p 152 KTEEFFRGpSGQLVGTRKLLVYYIGGEAD----KWTMHEYIL 189
                       *****99889999**********765555....8******76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.55E-3150207IPR003441NAC domain
PROSITE profilePS5100532.258207IPR003441NAC domain
PfamPF023651.5E-1859188IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MVHLEEVHEV TGAGTAGGHD DDDEHRQLTV AVNGGSGKKK KKMLMKKEKH EVVPQLRFPP  60
GFRFEPTDME LLEVFLRRKI DGRKLPLEVI FFDVPILNWE PHKLVEARKA YGVDRWYFFT  120
KREPCLTNKE GDPRRKLNDV VGVSAGWKSS GKTEEFFRGP SGQLVGTRKL LVYYIGGEAD  180
KWTMHEYILA DCKDQMDQFV LCTIQEKKYI DANCKRRKRI SDGSKEPSTR KKKTAATTSQ  240
QPEQATEHEE TSVYSDEHHL SLQEEHLMTP LPLLEHGQHH HQSLQEEHAM TLYEPITATH  300
GTDLHEGYLD GDHHNYNVDV DTEEQTLAYN DGFFETPLMM MPQQHVYQAS VEEMELQTTY  360
GLNQSTILFN YQYASEHQLN NAMDPVVYAN DNQGQQLTIC DDYTSQISSQ VVNTMECANC  420
HDHHQLCQQP TAQGYYQKTG TLEDILGCPL RPGSLDTSPD TVFEGPEPLS YAAPGDDAEG  480
DLSNDCFGDN LVDNNGCNDA TMALLPDEEG NMGTNGGREW MMW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-20432081169Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13642GKKKKKM
23746KKKKKMLMKK
3216232RKRISDGSKEPSTRKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g26600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024318943.10.0NAC domain-containing protein 26-like
TrEMBLI1INU90.0I1INU9_BRADI; Uncharacterized protein
STRINGBRADI4G26600.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115562137
Representative plantOGRP1208335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46590.13e-22NAC domain containing protein 96