PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g26605.1.p
Common NameBRADI_4g26605
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 489aa    MW: 55514.6 Da    PI: 4.7784
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g26605.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM82.68.1e-26571862128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgk.rknratk..sgyWkatgkdk 90 
                       ppGfrF P+d el++ +L+ k++g+kl+le v+ ev i+++eP +L  ++ + ++++wyfF+k +++++++  +++r+ +  +++Wkatg+ +
  Bradi4g26605.1.p  57 PPGFRFVPSDLELMDVFLRGKIDGRKLPLEVVFFEVPILNWEPDKLVeARKAYGTDRWYFFTKWEQSTTNKAgEPRRKLHdvDATWKATGSRT 149
                       9****************************888**************73444446779******9999987542566654445899******** PP

               NAM  91 evlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +v +     g +vg+kk L+++      g   +W mhey l
  Bradi4g26605.1.p 150 TVRRGsgpAGVVVGTKKLLTYHV----GGDVGNWSMHEYLL 186
                       999977777778**********5....45566*******76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-3149201IPR003441NAC domain
PROSITE profilePS5100531.33556203IPR003441NAC domain
PfamPF023651.1E-1557185IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MVHLEELHHQ VAGAGGHDEH QEQQQQLIVA VVDGGGEEEK KKKEKEKHEV VPQLRFPPGF  60
RFVPSDLELM DVFLRGKIDG RKLPLEVVFF EVPILNWEPD KLVEARKAYG TDRWYFFTKW  120
EQSTTNKAGE PRRKLHDVDA TWKATGSRTT VRRGSGPAGV VVGTKKLLTY HVGGDVGNWS  180
MHEYLLDGTD QMDQFVLCTI QEKVHCNGKR RKRPAKELLP KRKKEEAAAS GSSQSQSQSQ  240
QQPEQEETTA YYSDPLPPPL SEHGQYYDQY HLAALQEEDE DEEFPMELEP LLPLLEHRQY  300
YHPQASLQEE HAVAFGADPL EGYLDGDHHD YPLVDVATEE EDTLAYNGFG ALEPPLMMPQ  360
DQHGYQALLL EEMNIEYYMQ QLDRNQGQQS MWGQNQISSQ VNEYTCWHGH HLYQQSAAQK  420
TGTLEDMFGC PDTVLQEQEP LSHEAPSGDD TRGDLVFLVN GNNGGKDARM ASHVCQHGGE  480
GQHKSTMDM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-165320314165NO APICAL MERISTEM PROTEIN
1ut4_B3e-165320314165NO APICAL MERISTEM PROTEIN
1ut7_A3e-165320314165NO APICAL MERISTEM PROTEIN
1ut7_B3e-165320314165NO APICAL MERISTEM PROTEIN
4dul_A3e-165320314165NAC domain-containing protein 19
4dul_B3e-165320314165NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209223RRKRPAKELLPKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g26605.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024318944.10.0NAC domain-containing protein 13
TrEMBLA0A0Q3ETJ20.0A0A0Q3ETJ2_BRADI; Uncharacterized protein (Fragment)
STRINGBRADI4G26600.11e-124(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115562137
Representative plantOGRP1208335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44290.12e-20NAC domain containing protein 60